Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G339300.1 | Wheat | cytosol | 67.92 | 62.97 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 64.33 | 59.75 |
| Os06t0688100-02 | Rice | cytosol | 61.6 | 58.04 |
| KXG20689 | Sorghum | cytosol | 54.78 | 51.69 |
| Zm00001d014575_P002 | Maize | cytosol | 54.61 | 48.48 |
| Zm00001d036138_P002 | Maize | cytosol | 18.77 | 45.64 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 48.29 | 44.99 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 47.27 | 43.83 |
| KRH39395 | Soybean | cytosol | 39.93 | 37.26 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 39.76 | 37.16 |
| KRH07819 | Soybean | cytosol | 39.76 | 37.16 |
| CDY71933 | Canola | cytosol | 21.67 | 36.49 |
| Bra022989.1-P | Field mustard | cytosol | 33.28 | 33.39 |
| CDY43658 | Canola | cytosol | 34.13 | 33.06 |
| Solyc02g082340.2.1 | Tomato | nucleus | 34.3 | 32.58 |
| CDX84629 | Canola | cytosol | 33.79 | 32.3 |
| Bra021928.1-P | Field mustard | nucleus | 32.94 | 32.27 |
| CDX79576 | Canola | cytosol | 33.45 | 32.24 |
| AT2G34750.1 | Thale cress | cytosol | 33.45 | 31.97 |
| AT2G39240.1 | Thale cress | cytosol | 30.72 | 31.41 |
| AT1G30590.2 | Thale cress | cytosol | 32.25 | 31.14 |
| CDX84284 | Canola | cytosol | 31.57 | 30.83 |
| CDY31637 | Canola | cytosol | 30.55 | 30.7 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 9.56 | 30.43 |
| Bra005396.1-P | Field mustard | cytosol | 32.08 | 29.94 |
| CDY36511 | Canola | plastid | 9.04 | 19.63 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G109300.1 | EnsemblPlantsGene:TraesCS4B01G109300 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg |
| MapMan:15.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:121937316..121943301
Molecular Weight (calculated)
66404.5 Da
IEP (calculated)
5.124
GRAVY (calculated)
-0.015
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKLRRDDM SEEANPICDS VAFGIVGQVL QSVRMEPHLA DSHALEQYHR IVGILDTSKR RNPDKENPDK KALYVTCLKA LASEISKIDI NYHHSLLKNI
101: FTVSIWYLPN DTIPEFLELI TRLAAVADDY LTECLHLLVN NFVPPLVDRT KMVKWAVSRK TYIFSQLCMC LIRISNIIPL APKVLRGIID KCMPNLFDSK
201: DKTISFVECM LGLDTGRMGD LIRAVLLDKI VHLLTELDVN ITWEGILQEQ HNKGIFDMEL QDLDGNEEED GLGHGGVKVL LGANAHAEKL DDLMVVIFEH
301: FKSLDAQCLH KEFTILKTIF RASVLTVDTP KFVQFIMFYI CARDPEICAL EFALFLTDIF KNKEEDPISR MSAVSYIGSY LSRARFISDD TVVAIIGKLV
401: DWLVDYCDHE STRESTPIPN HQLFYATCQA VMYFLCFRLR YIMDCPNLKS DLFRMPFGTL FHHQLEPLKV CLPSIVSEFL RQAKGAKLVA KFVDPAAKDT
501: VESDCSRTSG GINRFDMFFP FDPYLLKESD RYISSHFEVW SMVMTESDDS DDVLDTPEMN ADGGGSFSMP ARIKPSASPP MSGDPP
101: FTVSIWYLPN DTIPEFLELI TRLAAVADDY LTECLHLLVN NFVPPLVDRT KMVKWAVSRK TYIFSQLCMC LIRISNIIPL APKVLRGIID KCMPNLFDSK
201: DKTISFVECM LGLDTGRMGD LIRAVLLDKI VHLLTELDVN ITWEGILQEQ HNKGIFDMEL QDLDGNEEED GLGHGGVKVL LGANAHAEKL DDLMVVIFEH
301: FKSLDAQCLH KEFTILKTIF RASVLTVDTP KFVQFIMFYI CARDPEICAL EFALFLTDIF KNKEEDPISR MSAVSYIGSY LSRARFISDD TVVAIIGKLV
401: DWLVDYCDHE STRESTPIPN HQLFYATCQA VMYFLCFRLR YIMDCPNLKS DLFRMPFGTL FHHQLEPLKV CLPSIVSEFL RQAKGAKLVA KFVDPAAKDT
501: VESDCSRTSG GINRFDMFFP FDPYLLKESD RYISSHFEVW SMVMTESDDS DDVLDTPEMN ADGGGSFSMP ARIKPSASPP MSGDPP
001: MGAEEFPSVP FNSNAMDNAE YTDTDLVFAV RKALASVQNG DTDDYSQLKT VMCLTEDADF DAVAQLETVL KSLSVSVAWI DLVHHKDLLE AMSLWYHSHR
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:TAIR;Acc:AT1G30590]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.