Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G440500.1 | Wheat | cytosol | 97.31 | 97.31 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 94.3 | 94.45 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 92.41 | 92.26 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 80.38 | 80.51 |
| Os06t0688100-02 | Rice | cytosol | 73.26 | 74.44 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 62.97 | 67.92 |
| KXG20689 | Sorghum | cytosol | 66.46 | 67.63 |
| Zm00001d014575_P002 | Maize | cytosol | 65.35 | 62.58 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 52.53 | 52.78 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 52.53 | 52.53 |
| Zm00001d036138_P002 | Maize | cytosol | 18.99 | 49.79 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 43.04 | 43.38 |
| CDY71933 | Canola | cytosol | 23.73 | 43.1 |
| KRH39395 | Soybean | cytosol | 41.93 | 42.2 |
| KRH07819 | Soybean | cytosol | 41.77 | 42.11 |
| Bra022989.1-P | Field mustard | cytosol | 37.82 | 40.92 |
| CDX79576 | Canola | cytosol | 38.77 | 40.3 |
| AT2G34750.1 | Thale cress | cytosol | 39.08 | 40.29 |
| CDY43658 | Canola | cytosol | 38.13 | 39.83 |
| CDX84629 | Canola | cytosol | 38.61 | 39.8 |
| Bra021928.1-P | Field mustard | nucleus | 37.34 | 39.46 |
| Solyc02g082340.2.1 | Tomato | nucleus | 38.29 | 39.22 |
| AT1G30590.2 | Thale cress | cytosol | 37.03 | 38.55 |
| CDY31637 | Canola | cytosol | 34.65 | 37.56 |
| CDX84284 | Canola | cytosol | 35.28 | 37.17 |
| AT2G39240.1 | Thale cress | cytosol | 33.07 | 36.47 |
| Bra005396.1-P | Field mustard | cytosol | 35.44 | 35.67 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 8.7 | 29.89 |
| CDY36511 | Canola | plastid | 8.23 | 19.26 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G339300.1 | EnsemblPlantsGene:TraesCS7B01G339300 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg |
| MapMan:15.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:593639507..593646523
Molecular Weight (calculated)
72071.6 Da
IEP (calculated)
4.532
GRAVY (calculated)
-0.146
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAELRRDDM AEEAGIVRDA VAFRLVEHVL QSVRMEPFLV DPRDLEQYEK MLKTLDTSKR KSADDEALYM TCLKALSDAV SKIDIMYHHS LLNNIFSVRI
101: WYLQRDTMVA LLDLITRLAA VADQYLRECL QMLVNNFTPP IVGERNEVPP WAVSRKKDIF SYLCGSLKTI SDTVPLAPRM LRDIIDRSMP KLFDNKAKMI
201: SFVECMLGLD TDRMGDLIGA ILLAKVVDLL TELDVNITWE DILQEEHDKG IFEMELEDLD ADDDGDGFGQ AGTKVCFGGN ACAEKLDGLM VVVCEHLKSL
301: DRQCLYKEFD ILKTIFRASL LRVHRSKFAQ FIMFYTCSLD PKTLGEGFAV FLTDIVTEKK DDPISRMSAV SYVGSYLSRA RFISADTVVT ILKKLVDWCV
401: DYCDHQSKRE ATPIPNHQLF YATCQAVMYV LCFRLRSIMD YPNLKSDLFH MPFGFLFRHR LEPLKVCLPS IVNEFLRQAK DAGLVAAFVD PAAEDAIESD
501: LSRTFGGINR LDMFFPFDPY LLKESDRYIR PNFEFWSMVK TTYSDDTDDD DDELEDLDAP EMNVGSLDDH VEIDINSDDD DLEYTMNKMS ITPHHSFLHQ
601: MAMDSDGGLS MPARIRPSTS PPSRWAMSGE SP
101: WYLQRDTMVA LLDLITRLAA VADQYLRECL QMLVNNFTPP IVGERNEVPP WAVSRKKDIF SYLCGSLKTI SDTVPLAPRM LRDIIDRSMP KLFDNKAKMI
201: SFVECMLGLD TDRMGDLIGA ILLAKVVDLL TELDVNITWE DILQEEHDKG IFEMELEDLD ADDDGDGFGQ AGTKVCFGGN ACAEKLDGLM VVVCEHLKSL
301: DRQCLYKEFD ILKTIFRASL LRVHRSKFAQ FIMFYTCSLD PKTLGEGFAV FLTDIVTEKK DDPISRMSAV SYVGSYLSRA RFISADTVVT ILKKLVDWCV
401: DYCDHQSKRE ATPIPNHQLF YATCQAVMYV LCFRLRSIMD YPNLKSDLFH MPFGFLFRHR LEPLKVCLPS IVNEFLRQAK DAGLVAAFVD PAAEDAIESD
501: LSRTFGGINR LDMFFPFDPY LLKESDRYIR PNFEFWSMVK TTYSDDTDDD DDELEDLDAP EMNVGSLDDH VEIDINSDDD DLEYTMNKMS ITPHHSFLHQ
601: MAMDSDGGLS MPARIRPSTS PPSRWAMSGE SP
001: MGAEEFPSVP FNSNAMDNAE YTDTDLVFAV RKALASVQNG DTDDYSQLKT VMCLTEDADF DAVAQLETVL KSLSVSVAWI DLVHHKDLLE AMSLWYHSHR
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:TAIR;Acc:AT1G30590]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.