Factsheet for VIT_04s0044g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 2
extracellular 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01700.t01	Wine grape	cytosol	65.76	19.3
KRH07819	Soybean	cytosol	48.37	14.19
KRH39395	Soybean	cytosol	47.83	14.01
AT2G34750.1	Thale cress	cytosol	41.3	12.4
CDY43658	Canola	cytosol	38.59	11.74
Bra021928.1-P	Field mustard	nucleus	38.04	11.71
Bra022989.1-P	Field mustard	cytosol	36.96	11.64
CDX79576	Canola	cytosol	38.04	11.51
CDX84629	Canola	cytosol	37.5	11.26
AT2G39240.1	Thale cress	cytosol	34.24	10.99
Zm00001d036138_P002	Maize	cytosol	14.13	10.79
GSMUA_Achr3P11670_001	Banana	cytosol	36.96	10.76
CDY31637	Canola	cytosol	32.61	10.29
GSMUA_Achr1P19720_001	Banana	cytosol	34.24	10.02
CDX84284	Canola	cytosol	32.07	9.83
Os06t0688100-02	Rice	cytosol	33.15	9.81
AT1G30590.2	Thale cress	cytosol	32.07	9.72
TraesCS4B01G109300.1	Wheat	cytosol	30.43	9.56
Bra005396.1-P	Field mustard	cytosol	32.07	9.39
TraesCS6A01G171400.1	Wheat	cytosol	29.35	9.09
TraesCS7D01G430000.2	Wheat	cytosol	30.43	8.87
TraesCS7A01G440500.1	Wheat	cytosol	30.43	8.86
KXG20689	Sorghum	cytosol	29.89	8.86
TraesCS7B01G339300.1	Wheat	cytosol	29.89	8.7
HORVU7Hr1G100370.1	Barley	cytosol	29.89	8.69
TraesCS6D01G161100.3	Wheat	cytosol	29.89	8.65
TraesCS6B01G199600.1	Wheat	cytosol	29.35	8.56
Zm00001d014575_P002	Maize	cytosol	29.35	8.18
CDY71933	Canola	cytosol	4.35	2.3
CDY36511	Canola	plastid	2.17	1.48

Protein Annotations

MapMan:35.2	ProteinID:CCB60382	ProteinID:CCB60382.1	UniProt:F6I0B6	EMBL:FN596506	GO:GO:0001042
GO:GO:0001180	GO:GO:0001181	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006356	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	PFAM:PF05327	PANTHER:PTHR12790	InterPro:RNA_pol_I_trans_ini_fac_RRN3
UniParc:UPI000210A57A	ArrayExpress:VIT_04s0044g01800	EnsemblPlantsGene:VIT_04s0044g01800	EnsemblPlants:VIT_04s0044g01800.t01	:	:

Description

No Description!

Coordinates

chr4:+:23624397..23627351

Molecular Weight (calculated)

20740.4 Da

IEP (calculated)

4.464

GRAVY (calculated)

0.177

Length

184 amino acids

Sequence
(BLAST)

001: MSFSLGAFCG DGQSTIRLAS VRWLNNLKKI LFQASLLWFQ IENIQLGAAS SGNYLDGCLD VLVSNFMPPY SFLDLLKQSR GLARKDQVLS RVHSTSEDIS
101: DLVPLVPSRL VPKVIQRMPN VFTEEPLIVL HVENMLRLES GAIQELVGKM MLVAMMDRLV DLDVEIAWEE ILQDDYSQGM FEMS

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.