Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84629 | Canola | cytosol | 98.29 | 93.64 |
| Bra021928.1-P | Field mustard | nucleus | 80.31 | 78.43 |
| AT2G34750.1 | Thale cress | cytosol | 75.0 | 71.45 |
| Bra005396.1-P | Field mustard | cytosol | 71.06 | 66.08 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 54.11 | 50.4 |
| KRH39395 | Soybean | cytosol | 50.0 | 46.5 |
| KRH07819 | Soybean | cytosol | 48.97 | 45.61 |
| Solyc02g082340.2.1 | Tomato | nucleus | 46.23 | 43.76 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 46.23 | 42.72 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 44.18 | 41.02 |
| Os06t0688100-02 | Rice | cytosol | 43.49 | 40.84 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 40.07 | 39.39 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 41.44 | 38.05 |
| KXG20689 | Sorghum | cytosol | 40.41 | 38.0 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 40.92 | 37.88 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 40.92 | 37.82 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 40.58 | 37.44 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 40.41 | 37.4 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 40.24 | 37.18 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 11.64 | 36.96 |
| Zm00001d014575_P002 | Maize | cytosol | 39.9 | 35.3 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 33.39 | 33.28 |
| Zm00001d036138_P002 | Maize | cytosol | 10.45 | 25.31 |
Protein Annotations
| EnsemblPlants:Bra022989.1 | EnsemblPlants:Bra022989.1-P | EnsemblPlantsGene:Bra022989 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold |
| InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI000253FE14 |
| UniProt:M4E2I8 | MapMan:15.2.1 | : | : | : | : |
Description
AT2G34750 (E=2e-221) | RNA polymerase I specific transcription initiation factor RRN3 family protein
Coordinates
chrA03:-:8109897..8112983
Molecular Weight (calculated)
66033.6 Da
IEP (calculated)
4.624
GRAVY (calculated)
-0.096
Length
584 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASEALTDP SSLYNVGNND LSDTETVLNV RNALASVQNA LLKALSGSVA CIDVNHHRRI LSGIFGMSLW DHKPHVMDSL MDLIISLAAT SGKYLDNCLN
101: MLIRHFVPPP WVIDRLWQGR VIEQKQHVLS RVHGALLKIS LLVPLAPSRL LPMLAHQLPK INKKDQVVVI YVENLLKLEN SSIGQVGGGM IFMMVMERLR
201: DLDLEIDWDD ILQDDSNRGM FDMELEDAMN EGDELPVGSL NQDTSGGKIE SLDKLMVTCF DHLESCNLHG RLDQVFEKLF DSFENFILNT YKSKVSQFLM
301: FYACSLDPEN CGVKFGSKLL DIFLSSNKPR PTRQVSLSPL WMSAVAYLAS YLARGKFLPI SYVASMLKRL VDECADYCRI CNDDIRPEAH QLFYSGCQAI
401: MYVLCFRMRS ILDVPRFRSE LIPLESILMH KLNPLMVCLP SVVAEFLRQA KAGGLFVVSD SFIFEDLLES ELSRAFGGCE RLDTFFPFDP CLLKSSNSNI
501: SGNFIYWSMV RPTYDKDDDE EDDDDAEIIV NGDEESDEED EGDLDYALNK MSITPKHSFK NNMERERLMK MPSMIRPSTS PESL
101: MLIRHFVPPP WVIDRLWQGR VIEQKQHVLS RVHGALLKIS LLVPLAPSRL LPMLAHQLPK INKKDQVVVI YVENLLKLEN SSIGQVGGGM IFMMVMERLR
201: DLDLEIDWDD ILQDDSNRGM FDMELEDAMN EGDELPVGSL NQDTSGGKIE SLDKLMVTCF DHLESCNLHG RLDQVFEKLF DSFENFILNT YKSKVSQFLM
301: FYACSLDPEN CGVKFGSKLL DIFLSSNKPR PTRQVSLSPL WMSAVAYLAS YLARGKFLPI SYVASMLKRL VDECADYCRI CNDDIRPEAH QLFYSGCQAI
401: MYVLCFRMRS ILDVPRFRSE LIPLESILMH KLNPLMVCLP SVVAEFLRQA KAGGLFVVSD SFIFEDLLES ELSRAFGGCE RLDTFFPFDP CLLKSSNSNI
501: SGNFIYWSMV RPTYDKDDDE EDDDDAEIIV NGDEESDEED EGDLDYALNK MSITPKHSFK NNMERERLMK MPSMIRPSTS PESL
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.