Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G171400.1 | Wheat | cytosol | 89.22 | 94.78 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 94.14 | 93.4 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 80.51 | 80.38 |
| Os06t0688100-02 | Rice | cytosol | 74.33 | 75.4 |
| KXG20689 | Sorghum | cytosol | 67.35 | 68.44 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 59.75 | 64.33 |
| Zm00001d014575_P002 | Maize | cytosol | 65.93 | 63.03 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 54.04 | 54.21 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 53.57 | 53.48 |
| Zm00001d036138_P002 | Maize | cytosol | 19.65 | 51.45 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 45.01 | 45.3 |
| CDY71933 | Canola | cytosol | 24.72 | 44.83 |
| KRH39395 | Soybean | cytosol | 44.06 | 44.27 |
| KRH07819 | Soybean | cytosol | 43.58 | 43.86 |
| AT2G34750.1 | Thale cress | cytosol | 40.89 | 42.09 |
| Bra022989.1-P | Field mustard | cytosol | 37.88 | 40.92 |
| Solyc02g082340.2.1 | Tomato | nucleus | 39.94 | 40.84 |
| AT1G30590.2 | Thale cress | cytosol | 38.83 | 40.36 |
| CDX79576 | Canola | cytosol | 38.83 | 40.3 |
| CDY43658 | Canola | cytosol | 38.35 | 40.0 |
| CDX84629 | Canola | cytosol | 38.83 | 39.97 |
| Bra021928.1-P | Field mustard | nucleus | 37.88 | 39.97 |
| AT2G39240.1 | Thale cress | cytosol | 34.23 | 37.7 |
| CDX84284 | Canola | cytosol | 35.82 | 37.67 |
| CDY31637 | Canola | cytosol | 34.71 | 37.56 |
| Bra005396.1-P | Field mustard | cytosol | 35.97 | 36.15 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 8.56 | 29.35 |
| CDY36511 | Canola | plastid | 8.4 | 19.63 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G199600.1 | EnsemblPlantsGene:TraesCS6B01G199600 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg |
| MapMan:15.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:239308989..239316354
Molecular Weight (calculated)
71956.4 Da
IEP (calculated)
4.640
GRAVY (calculated)
-0.127
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAELWRDDM AVEAEKPIRD SVAFRLVEHV LQSLRMDPLL VDPYDMDQYN KMVSTLDTSK KKTPDEEALY VTTLKALSEA VSKIDITYHH LLLNNIFTVR
101: IWYLQRDTLD AFLDLITRLA AVADQYLREC LQMLVNNFTP PLVQRNELPR WAVSRKKDIF FHLCESLKTI SNTVPLAPRV LRDIIDRSMP KLFDNKAKMV
201: SFVECMLGLD TDRMGDLIGA TLLAKVVDLL TELDVNITWE DIIQGEHNKG IFEMELEDLD EDEDGLGQAG TKVHVLFGGN ACAEKLDSLM VVVCEHLKSC
301: AERGYLDKEF DILKTIFRAS VLRVHRSKFC QFIMFYACSL DPKICGLEFA FFLTDIFLNK EEDPISRMSA VSYVGSYLSR ARFISADTVL GILKKLLDWC
401: DEYCVLQNRG TTAHPNHQIF YATCQAVMYV LCFRLRSIMD YPNLKAQLFQ LSFGFILNHR LEALKVCLPS IVNEFLRQAK DAGLFAASMY SAAEDAIESD
501: LSRAFGGINR LDTFFPFDPY LLKESDRYIR PNFEFWSMVK TTYSDDKDDD DDELEDLDAP EMKVGSLDDH VEIDINSDDD ELEYSMNKMS ITPHRSFYHG
601: VAADGDAGLS MPARIRPSAS PPSRWAMSGS P
101: IWYLQRDTLD AFLDLITRLA AVADQYLREC LQMLVNNFTP PLVQRNELPR WAVSRKKDIF FHLCESLKTI SNTVPLAPRV LRDIIDRSMP KLFDNKAKMV
201: SFVECMLGLD TDRMGDLIGA TLLAKVVDLL TELDVNITWE DIIQGEHNKG IFEMELEDLD EDEDGLGQAG TKVHVLFGGN ACAEKLDSLM VVVCEHLKSC
301: AERGYLDKEF DILKTIFRAS VLRVHRSKFC QFIMFYACSL DPKICGLEFA FFLTDIFLNK EEDPISRMSA VSYVGSYLSR ARFISADTVL GILKKLLDWC
401: DEYCVLQNRG TTAHPNHQIF YATCQAVMYV LCFRLRSIMD YPNLKAQLFQ LSFGFILNHR LEALKVCLPS IVNEFLRQAK DAGLFAASMY SAAEDAIESD
501: LSRAFGGINR LDTFFPFDPY LLKESDRYIR PNFEFWSMVK TTYSDDKDDD DDELEDLDAP EMKVGSLDDH VEIDINSDDD ELEYSMNKMS ITPHRSFYHG
601: VAADGDAGLS MPARIRPSAS PPSRWAMSGS P
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.