Factsheet for VIT_04s0044g01700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	19.3	65.76
Solyc02g082340.2.1	Tomato	nucleus	57.89	58.83
Bra022989.1-P	Field mustard	cytosol	50.4	54.11
CDY71933	Canola	cytosol	29.98	54.02
AT2G34750.1	Thale cress	cytosol	52.79	54.0
CDX79576	Canola	cytosol	51.99	53.62
CDX84629	Canola	cytosol	51.83	53.02
Bra021928.1-P	Field mustard	nucleus	49.92	52.34
AT1G30590.2	Thale cress	cytosol	50.4	52.06
CDY43658	Canola	cytosol	49.28	51.07
GSMUA_Achr3P11670_001	Banana	cytosol	51.04	50.63
GSMUA_Achr1P19720_001	Banana	cytosol	49.28	49.13
CDY31637	Canola	cytosol	45.61	49.06
CDX84284	Canola	cytosol	46.41	48.5
Os06t0688100-02	Rice	cytosol	48.01	48.39
AT2G39240.1	Thale cress	cytosol	43.54	47.64
Bra005396.1-P	Field mustard	cytosol	47.05	46.97
TraesCS6A01G171400.1	Wheat	cytosol	44.34	46.8
TraesCS6D01G161100.3	Wheat	cytosol	45.93	45.28
TraesCS6B01G199600.1	Wheat	cytosol	45.3	45.01
KXG20689	Sorghum	cytosol	43.54	43.96
HORVU7Hr1G100370.1	Barley	cytosol	43.86	43.44
TraesCS7D01G430000.2	Wheat	cytosol	43.54	43.26
TraesCS7B01G339300.1	Wheat	cytosol	43.38	43.04
TraesCS7A01G440500.1	Wheat	cytosol	43.22	42.88
Zm00001d014575_P002	Maize	cytosol	43.22	41.06
TraesCS4B01G109300.1	Wheat	cytosol	37.16	39.76
Zm00001d036138_P002	Maize	cytosol	13.24	34.44
CDY36511	Canola	plastid	11.96	27.78

Protein Annotations

EntrezGene:100248166	wikigene:100248166	MapMan:15.2.1	ProteinID:CCB60391	ProteinID:CCB60391.1	UniProt:F6I0C5
EMBL:FN596506	GO:GO:0000166	GO:GO:0001042	GO:GO:0001180	GO:GO:0001181	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006356	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	EntrezGene:LOC100248166	wikigene:LOC100248166
PFAM:PF05327	PANTHER:PTHR12790	InterPro:RNA_pol_I_trans_ini_fac_RRN3	TIGR:TC52665	UniParc:UPI000210A7C7	ArrayExpress:VIT_04s0044g01700
EnsemblPlantsGene:VIT_04s0044g01700	EnsemblPlants:VIT_04s0044g01700.t01	unigene:Vvi.3464	RefSeq:XP_002263973	RefSeq:XP_002263973.2	RefSeq:XP_010649342.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:23532720..23544988

Molecular Weight (calculated)

70884.6 Da

IEP (calculated)

4.545

GRAVY (calculated)

0.028

Length

627 amino acids

Sequence
(BLAST)

001: MGVELATDRA GFHEMEEVNF SDSELVYHVR HALQSVPLGD SDSYDQLIGV LHHKERLAPD EVALLVTSLK ALSGAVSCID MVHHKSLLSS IFGMSLWNYG
101: PDVMDALLEL ILSLAASSGN YLDCSLDMLV SNFMPPYSLL DFLKQPRGLA RKDQVLSRVH STLKDIADLV PLAPSRLVPI VIQRMPNVFT KEPLIMIYVE
201: NMLRLEGGAI RELVGNMMLV ALMDRLVDLD VEIAWEEVLQ DDCSKGIFEM ELEDMEEPAD DVENDGGELH RGSLSRKSLG GNLIAEKLDS LMVLTFEHLE
301: SCEAGGRLIE VFETLVLSFQ TTVLNAFKSK FAQFVMFYAC ALDPENCGVR FARVLADFFV CSTFPPLNRM SAVAYLASYL SRGKFLTASF VANILERLVV
401: WCLEYCKIHD GDINPKAHQV FYSGCQAIMY VLCFRMRSMM NVPHLRSQLL LLPLETILKH PLSPLKVCLP SIVEEFLRQA KAARLFTVSE TFIFSDLLES
501: ELSRAFGGIE RLDMFFPFDP CLLKKCDRFI RPNFVYWSMI RTTYDDGEDS SDEEPAEDYE ASHPDDVMND DAMARSYDSH DLELDEFDHS MNKMSITPKN
601: SLYYRFGDEL KVQMPSRIRP STSPESL

Best Arabidopsis Sequence Match ( AT2G34750.1 )
(BLAST)

001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.