Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31637 | Canola | cytosol | 88.67 | 91.25 |
| CDY43658 | Canola | cytosol | 74.67 | 74.05 |
| CDX84629 | Canola | cytosol | 73.0 | 71.45 |
| CDX79576 | Canola | cytosol | 72.0 | 71.05 |
| AT2G34750.1 | Thale cress | cytosol | 66.83 | 65.42 |
| CDY71933 | Canola | cytosol | 37.17 | 64.08 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 48.5 | 46.41 |
| KRH39395 | Soybean | cytosol | 46.5 | 44.43 |
| KRH07819 | Soybean | cytosol | 46.17 | 44.18 |
| Solyc02g082340.2.1 | Tomato | nucleus | 42.83 | 41.65 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 42.17 | 40.03 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 41.83 | 39.9 |
| Os06t0688100-02 | Rice | cytosol | 40.83 | 39.39 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 36.83 | 37.21 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 38.17 | 36.01 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 37.67 | 35.82 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 37.5 | 35.6 |
| KXG20689 | Sorghum | cytosol | 36.67 | 35.43 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 37.17 | 35.28 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 37.17 | 35.23 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 37.0 | 35.18 |
| Zm00001d014575_P002 | Maize | cytosol | 35.33 | 32.12 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 9.83 | 32.07 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 30.83 | 31.57 |
| CDY36511 | Canola | plastid | 14.0 | 31.11 |
| Zm00001d036138_P002 | Maize | cytosol | 11.33 | 28.22 |
Protein Annotations
| EnsemblPlants:CDX84284 | EnsemblPlantsGene:GSBRNA2T00141370001 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | ProteinID:CDX84284 |
| ProteinID:CDX84284.1 | SEG:seg | UniParc:UPI0004EE0DCC | MapMan:15.2.1 | : | : |
Description
BnaC04g10460D
Coordinates
chrLK031836:+:1419510..1422476
Molecular Weight (calculated)
68639.3 Da
IEP (calculated)
4.546
GRAVY (calculated)
-0.060
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAAEVLTDP SSLYESNYMG KGDLSDTDMV ITVRNTLASV QNGESYRYDE LVKTMQATKN SDLEAQLVTA LKALSASVAY LDIIHHEKLL CLVFRMSLWD
101: LKPHVMDALV ALLISLAVTT GKYLDPCLNM LVRHFLPPDW VVKRLSQHRV MKQKMEVLSR VHEALLKICI LFPRAPSRIL DMLPKINKKG QVVEIFVENL
201: LKLENSLMGQ DDGSKIFMMV MERLRDMDLE IDWDYIPQDD SSRGMFDMEL EDEVEDNMKE GDELPVGSLT SDGNVVFESL DKLMVLSFDH LESCKLDGRL
301: DQVFEKLFEA FEKFILDIDK IKVSQFLMFY ACSLDPENCG VKFASKLMDI FLFSNKPTTR QVSPSLLWMS AMAYLASYLA RGKFLPVSYV ASILKRLVDE
401: CADYCRTCND DINSDANQIF YSGCQAIMYV LCFRMRSILA VPCFRSELIP LESILMHKLN PLKECLPWVV AEFLKQAKAG GLFVVSDSFI FDKLLESKRL
501: DAFFPFDPCL LKSSNSFISR NFIYWSMVRP TYDKDDDDEE DAEIIVNGDE ESGEEEEDDV DHVMDKMSIT PKHSFMNEME RDRLLKMSSL IRPSISPQSF
101: LKPHVMDALV ALLISLAVTT GKYLDPCLNM LVRHFLPPDW VVKRLSQHRV MKQKMEVLSR VHEALLKICI LFPRAPSRIL DMLPKINKKG QVVEIFVENL
201: LKLENSLMGQ DDGSKIFMMV MERLRDMDLE IDWDYIPQDD SSRGMFDMEL EDEVEDNMKE GDELPVGSLT SDGNVVFESL DKLMVLSFDH LESCKLDGRL
301: DQVFEKLFEA FEKFILDIDK IKVSQFLMFY ACSLDPENCG VKFASKLMDI FLFSNKPTTR QVSPSLLWMS AMAYLASYLA RGKFLPVSYV ASILKRLVDE
401: CADYCRTCND DINSDANQIF YSGCQAIMYV LCFRMRSILA VPCFRSELIP LESILMHKLN PLKECLPWVV AEFLKQAKAG GLFVVSDSFI FDKLLESKRL
501: DAFFPFDPCL LKSSNSFISR NFIYWSMVRP TYDKDDDDEE DAEIIVNGDE ESGEEEEDDV DHVMDKMSIT PKHSFMNEME RDRLLKMSSL IRPSISPQSF
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.