Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021928.1-P | Field mustard | nucleus | 95.54 | 96.66 |
| CDX79576 | Canola | cytosol | 80.0 | 79.61 |
| CDX84629 | Canola | cytosol | 80.33 | 79.28 |
| CDX84284 | Canola | cytosol | 74.05 | 74.67 |
| CDY31637 | Canola | cytosol | 70.41 | 73.07 |
| AT2G34750.1 | Thale cress | cytosol | 71.24 | 70.31 |
| CDY71933 | Canola | cytosol | 37.36 | 64.94 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 51.07 | 49.28 |
| KRH39395 | Soybean | cytosol | 47.44 | 45.7 |
| KRH07819 | Soybean | cytosol | 47.27 | 45.61 |
| Solyc02g082340.2.1 | Tomato | nucleus | 44.79 | 43.92 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 45.12 | 43.2 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 44.3 | 42.61 |
| Os06t0688100-02 | Rice | cytosol | 42.98 | 41.8 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 39.17 | 39.9 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 11.74 | 38.59 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 40.5 | 38.52 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 40.0 | 38.35 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 40.0 | 38.29 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 39.83 | 38.13 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 39.67 | 38.03 |
| KXG20689 | Sorghum | cytosol | 39.01 | 38.0 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 39.34 | 37.6 |
| Zm00001d014575_P002 | Maize | cytosol | 38.35 | 35.15 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 33.06 | 34.13 |
| CDY36511 | Canola | plastid | 14.55 | 32.59 |
| Zm00001d036138_P002 | Maize | cytosol | 11.07 | 27.8 |
Protein Annotations
| EnsemblPlants:CDY43658 | EnsemblPlantsGene:GSBRNA2T00077004001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:RNA_pol_I_trans_ini_fac_RRN3 |
| PANTHER:PTHR12790 | PFAM:PF05327 | ProteinID:CDY43658 | ProteinID:CDY43658.1 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI0004EE74EC | UniProt:A0A078I3H0 | MapMan:15.2.1 | : | : | : |
Description
BnaA04g20330DBnaA04g20330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3H0]
Coordinates
chrLK032564:+:95069..98755
Molecular Weight (calculated)
68278.4 Da
IEP (calculated)
4.420
GRAVY (calculated)
-0.019
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASEVLTDP SSLYDVGNGE YSDTYTMLTV RNALASVQNG ESERYEELVQ SMQIIKGADH AVWADLVTIL NALSGSVACI DIINHRKLLS SVFGMSLWDL
101: KPHVMEALVG LLISLAATSG KYLDSCLNML IGHFVPPRWV IDRLSQRRVI DQKTDVLSQV HGAILKISLL VPLAPSRLLP MLAQQMPKIN KKDNVVVMYV
201: ENLFKLESSP IGQVGSSMLF MMVMERLRDL DLEIDWDDIL QDDSSRGMFD MELEDTMNEG EENTSGGNVV FESLDKLMVI SFDHLESCNL DGRLDQVFEK
301: LFGAFENFIL NTYKSKVSQF LMFYACSLDP ENCGLKFASK LMDIFLSSNK PRPTRQVSVS PLWMSAVAYL ASYLARGKFL PVSFVASVLK RLVDECADYC
401: RTCNDDIRPE AHQIFYSGCQ AIMYVLCFRM RSILNVPLFR SQLIPLESIL MHRLNPLMVC LPSVVAEFLK QAKAGGMFVV SDAFIFDDLL ESELSRAFGG
501: PERLDTFFPF DSCLLKSSNS YISPNFIYWS MVRPTYEEDD DDEEDAEIIV NGDEESDEEE EEGDLDYSMN KMSITPKHSF KNKMERDGLL KMPSMIRPSI
601: SPQSF
101: KPHVMEALVG LLISLAATSG KYLDSCLNML IGHFVPPRWV IDRLSQRRVI DQKTDVLSQV HGAILKISLL VPLAPSRLLP MLAQQMPKIN KKDNVVVMYV
201: ENLFKLESSP IGQVGSSMLF MMVMERLRDL DLEIDWDDIL QDDSSRGMFD MELEDTMNEG EENTSGGNVV FESLDKLMVI SFDHLESCNL DGRLDQVFEK
301: LFGAFENFIL NTYKSKVSQF LMFYACSLDP ENCGLKFASK LMDIFLSSNK PRPTRQVSVS PLWMSAVAYL ASYLARGKFL PVSFVASVLK RLVDECADYC
401: RTCNDDIRPE AHQIFYSGCQ AIMYVLCFRM RSILNVPLFR SQLIPLESIL MHRLNPLMVC LPSVVAEFLK QAKAGGMFVV SDAFIFDDLL ESELSRAFGG
501: PERLDTFFPF DSCLLKSSNS YISPNFIYWS MVRPTYEEDD DDEEDAEIIV NGDEESDEEE EEGDLDYSMN KMSITPKHSF KNKMERDGLL KMPSMIRPSI
601: SPQSF
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.