Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84629 | Canola | cytosol | 95.89 | 95.11 |
| CDY43658 | Canola | cytosol | 79.61 | 80.0 |
| AT2G34750.1 | Thale cress | cytosol | 74.84 | 74.23 |
| CDX84284 | Canola | cytosol | 71.05 | 72.0 |
| CDY31637 | Canola | cytosol | 68.42 | 71.36 |
| CDY71933 | Canola | cytosol | 37.66 | 65.8 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 53.62 | 51.99 |
| KRH39395 | Soybean | cytosol | 48.19 | 46.66 |
| KRH07819 | Soybean | cytosol | 48.03 | 46.57 |
| Solyc02g082340.2.1 | Tomato | nucleus | 44.9 | 44.25 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 44.74 | 43.04 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 42.93 | 41.49 |
| Os06t0688100-02 | Rice | cytosol | 42.43 | 41.48 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 39.31 | 40.24 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 40.62 | 38.84 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 40.3 | 38.83 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 40.3 | 38.77 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 39.97 | 38.39 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 39.8 | 38.35 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 39.64 | 38.13 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 11.51 | 38.04 |
| KXG20689 | Sorghum | cytosol | 38.82 | 38.0 |
| Zm00001d014575_P002 | Maize | cytosol | 38.49 | 35.45 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 32.24 | 33.45 |
| CDY36511 | Canola | plastid | 13.49 | 30.37 |
| Zm00001d036138_P002 | Maize | cytosol | 10.69 | 26.97 |
Protein Annotations
| EnsemblPlants:CDX79576 | EnsemblPlantsGene:GSBRNA2T00132338001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:RNA_pol_I_trans_ini_fac_RRN3 |
| PANTHER:PTHR12790 | PFAM:PF05327 | ProteinID:CDX79576 | ProteinID:CDX79576.1 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI0004EE63B3 | MapMan:15.2.1 | : | : | : | : |
Description
BnaC03g19120D
Coordinates
chrLK031818:-:884517..888095
Molecular Weight (calculated)
68737.7 Da
IEP (calculated)
4.512
GRAVY (calculated)
-0.106
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASEALTDP SSLYNVGNND LSDTETVLNV RNALASVQNG ESDLYDQFVE TIQINNRSDD ALGAQLDALL KALSGSVACI DVNHHRRILS GIFGMSLWDH
101: KPHVMDALVD LIISLAATSG KYLDNCLNML IRHFVPPPWV IDRLWQNRVI VQKQDVLSRV HGALLKISLL VPLAPSRLLP MLAQQLPKIN KKDQVVVIYV
201: ENLLKLENSS IGQVGGGMIF MMVMERLRDL DLEIDWDDIL QDDSNRGMFD MELEDAMNEG DELPVGSLNQ DTSRGKIESL DKLMVACFDH LESCNLHGRL
301: DQVFEKLFDS FENFILNTYK SKVSQFLMFY ACSLDPENCG VKFGSKLLDI FLSSNKPRPT RQVSLWMSAV AYLASYLARG KFLPVSYVAT MLKRLVDECA
401: DYCRICNDDI RPEAHQLLYS GCQAIMYVLC FRMRSILDVP RFRSELIPLE SILMHRLNPL MVCLPSVVAE FLRQAKAGGL FVVSDSFIFE DLLESELSRA
501: FGGCERLDTF FPFDPCLLKS SNSNISGNFI YWSMVRPTYD KDDDEEEDDA EIIVNGDEES DEEDEGDLDY ALNKMSITPK HSFKNKMERE RLVKMPSMIR
601: PSTSPESL
101: KPHVMDALVD LIISLAATSG KYLDNCLNML IRHFVPPPWV IDRLWQNRVI VQKQDVLSRV HGALLKISLL VPLAPSRLLP MLAQQLPKIN KKDQVVVIYV
201: ENLLKLENSS IGQVGGGMIF MMVMERLRDL DLEIDWDDIL QDDSNRGMFD MELEDAMNEG DELPVGSLNQ DTSRGKIESL DKLMVACFDH LESCNLHGRL
301: DQVFEKLFDS FENFILNTYK SKVSQFLMFY ACSLDPENCG VKFGSKLLDI FLSSNKPRPT RQVSLWMSAV AYLASYLARG KFLPVSYVAT MLKRLVDECA
401: DYCRICNDDI RPEAHQLLYS GCQAIMYVLC FRMRSILDVP RFRSELIPLE SILMHRLNPL MVCLPSVVAE FLRQAKAGGL FVVSDSFIFE DLLESELSRA
501: FGGCERLDTF FPFDPCLLKS SNSNISGNFI YWSMVRPTYD KDDDEEEDDA EIIVNGDEES DEEDEGDLDY ALNKMSITPK HSFKNKMERE RLVKMPSMIR
601: PSTSPESL
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.