Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G171400.1 | Wheat | cytosol | 90.72 | 97.14 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 93.4 | 94.14 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 81.13 | 81.78 |
| Os06t0688100-02 | Rice | cytosol | 75.47 | 77.17 |
| KXG20689 | Sorghum | cytosol | 68.87 | 70.53 |
| Zm00001d014575_P002 | Maize | cytosol | 67.61 | 65.15 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 54.09 | 54.43 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 53.77 | 54.37 |
| Zm00001d036138_P002 | Maize | cytosol | 19.81 | 52.28 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 45.28 | 45.93 |
| CDY71933 | Canola | cytosol | 24.53 | 44.83 |
| KRH39395 | Soybean | cytosol | 43.87 | 44.43 |
| KRH07819 | Soybean | cytosol | 43.4 | 44.02 |
| AT2G34750.1 | Thale cress | cytosol | 40.88 | 42.41 |
| Bra022989.1-P | Field mustard | cytosol | 38.05 | 41.44 |
| CDX79576 | Canola | cytosol | 38.84 | 40.62 |
| AT1G30590.2 | Thale cress | cytosol | 38.68 | 40.53 |
| CDY43658 | Canola | cytosol | 38.52 | 40.5 |
| CDX84629 | Canola | cytosol | 38.99 | 40.46 |
| Solyc02g082340.2.1 | Tomato | nucleus | 39.15 | 40.36 |
| Bra021928.1-P | Field mustard | nucleus | 37.89 | 40.3 |
| CDY31637 | Canola | cytosol | 35.22 | 38.42 |
| AT2G39240.1 | Thale cress | cytosol | 34.59 | 38.39 |
| CDX84284 | Canola | cytosol | 36.01 | 38.17 |
| Bra005396.1-P | Field mustard | cytosol | 36.32 | 36.78 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 8.65 | 29.89 |
| CDY36511 | Canola | plastid | 8.49 | 20.0 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G161100.3 | EnsemblPlantsGene:TraesCS6D01G161100 | InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg |
| MapMan:15.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:139367742..139374313
Molecular Weight (calculated)
72382.0 Da
IEP (calculated)
4.655
GRAVY (calculated)
-0.099
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAELRRDDM AEAAVKPIRD SVAFRFVEHV LQSVRMDPLL VDPYDMDQYN KMVSTLDTSK KKTPDEEALY VTTLKALSEA VSKIDITYHH LLLNNIFTIR
101: IWYLQRDTLD AFLDLITRLA AVADQYLREC LQMLVNNFTP PLVQRNELPR WAVSRKKDIF FHLCESLKTI SDTVPLAPRI LRDIIDRSMP KLFDNKAFLM
201: SLQKMVSFVE CMLGLDTDRM GDLIGATLLA KVVDLLTELD VNITWEDIIQ GEHNKGIFEM ELEDLNEDED GLGQAGTKVL FGGNACAEKL DSLMVVVCEH
301: LKSCAERGYL DKEFDILKAI FRASVLRVHR SKFCQFIMFY ACSLDPKICG LEFAFFLTEI FLNKEEDPIS RMSAVSYVGS YLSRARFISA DTVLAILKKI
401: VDWCDEYCVL QNRGTTANPN HQIFYGACQA VMYVLCFRLR SIMDYPNLKA QLFQLSFGFI LNHRLEPLKV CLPSIVNEFL RQAKDAGLFA ASMYSAAEDA
501: IESDLSRAFG GINRLDTFFP FDPYLLKESD RYIRPNFEFW SMVKTTYSND KDDDDDELLD LDAPEMNVGS LDDHVEIDIN SDDDELEYSM NKMSITPHHS
601: FYHGMAADGG DAGLSMPARI RPSASPPSRW AMSGSP
101: IWYLQRDTLD AFLDLITRLA AVADQYLREC LQMLVNNFTP PLVQRNELPR WAVSRKKDIF FHLCESLKTI SDTVPLAPRI LRDIIDRSMP KLFDNKAFLM
201: SLQKMVSFVE CMLGLDTDRM GDLIGATLLA KVVDLLTELD VNITWEDIIQ GEHNKGIFEM ELEDLNEDED GLGQAGTKVL FGGNACAEKL DSLMVVVCEH
301: LKSCAERGYL DKEFDILKAI FRASVLRVHR SKFCQFIMFY ACSLDPKICG LEFAFFLTEI FLNKEEDPIS RMSAVSYVGS YLSRARFISA DTVLAILKKI
401: VDWCDEYCVL QNRGTTANPN HQIFYGACQA VMYVLCFRLR SIMDYPNLKA QLFQLSFGFI LNHRLEPLKV CLPSIVNEFL RQAKDAGLFA ASMYSAAEDA
501: IESDLSRAFG GINRLDTFFP FDPYLLKESD RYIRPNFEFW SMVKTTYSND KDDDDDELLD LDAPEMNVGS LDDHVEIDIN SDDDELEYSM NKMSITPHHS
601: FYHGMAADGG DAGLSMPARI RPSASPPSRW AMSGSP
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.