Factsheet for AT1G30590.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G34750.1	Thale cress	cytosol	67.22	66.56
AT2G39240.1	Thale cress	cytosol	58.81	62.3
VIT_04s0044g01700.t01	Wine grape	cytosol	52.06	50.4
KRH39395	Soybean	cytosol	47.94	46.34
KRH07819	Soybean	cytosol	47.78	46.25
Solyc02g082340.2.1	Tomato	nucleus	43.49	42.79
GSMUA_Achr3P11670_001	Banana	cytosol	43.16	41.46
GSMUA_Achr1P19720_001	Banana	cytosol	42.83	41.34
Os06t0688100-02	Rice	cytosol	41.19	40.19
TraesCS6A01G171400.1	Wheat	cytosol	39.04	39.9
TraesCS6B01G199600.1	Wheat	cytosol	40.36	38.83
TraesCS6D01G161100.3	Wheat	cytosol	40.53	38.68
HORVU7Hr1G100370.1	Barley	cytosol	39.37	37.76
KXG20689	Sorghum	cytosol	38.39	37.52
TraesCS7B01G339300.1	Wheat	cytosol	38.55	37.03
TraesCS7D01G430000.2	Wheat	cytosol	38.39	36.93
TraesCS7A01G440500.1	Wheat	cytosol	37.89	36.39
Zm00001d014575_P002	Maize	cytosol	37.89	34.85
TraesCS4B01G109300.1	Wheat	cytosol	31.14	32.25
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	9.72	32.07
Zm00001d036138_P002	Maize	cytosol	10.21	25.73

Protein Annotations

MapMan:15.2.1	EntrezGene:839939	UniProt:A0A178WLR0	UniProt:A0A1P8APA8	ProteinID:ANM58488.1	ProteinID:ANM58489.1
ArrayExpress:AT1G30590	EnsemblPlantsGene:AT1G30590	RefSeq:AT1G30590	TAIR:AT1G30590	RefSeq:AT1G30590-TAIR-G	EnsemblPlants:AT1G30590.2
Unigene:At.65753	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	RefSeq:NP_001320918.1	RefSeq:NP_001320919.1	ProteinID:OAP19146.1	PFAM:PF05327
PANTHER:PTHR12790	InterPro:RNA_pol_I_trans_ini_fac_RRN3	UniParc:UPI0007E11858	:	:	:

Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:TAIR;Acc:AT1G30590]

Coordinates

chr1:-:10835735..10840872

Molecular Weight (calculated)

68457.0 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.045

Length

607 amino acids

Sequence
(BLAST)

001: MGAEEFPSVP FNSNAMDNAE YTDTDLVFAV RKALASVQNG DTDDYSQLKT VMCLTEDADF DAVAQLETVL KSLSVSVAWI DLVHHKDLLE AIFKMSLWYH
101: SHRPSVMDAL VDLIISLAAT SGKYLDPCLN MLVRNFSQPT FKHKVSQTQL VKKMQEVHPR VHAALHKISY LIPLAPWNLV SILAQNMRKI DKKDPSIVTY
201: VDNLLRLENS SIGEVVGSVI LMMVMERMLD LDLVSGCDDS NGGMFDMELE DAVESTMNEG DEFPVGALKQ NTSGGNVVSE LLDKLMVLFF HHLESCQNSD
301: RLDEVFEILF KSFENYILNT YKTKFSQFLM FYACSLDPEN CGVRFASKLL DIYLSSNTCR LTRMSAVAYL ASYLSRGKFL PASFVASMLK RLVDECAEYC
401: GTCNDDVKPE AHQVFYSGCQ AILYVLCFRM RSIVEIPRFQ SQFRSLESIL SHKLNPLLVC LPSVVSEFLK QAKAGGLFIV SESFIFDDLH ESELSRAFGG
501: FERLDTFFPF DPCLLKMSSS YISPNFNFWS MVKTTYGEDG DEELCDEVIV NGDADSAEEP DDDVELDSEM NTMSTTPKHS FMRETERLLK MPSRIRPSTS
601: PPESFLI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.