Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022989.1-P | Field mustard | cytosol | 71.45 | 75.0 |
| CDX79576 | Canola | cytosol | 74.23 | 74.84 |
| CDX84629 | Canola | cytosol | 74.23 | 74.23 |
| Bra021928.1-P | Field mustard | nucleus | 71.29 | 73.08 |
| CDY43658 | Canola | cytosol | 70.31 | 71.24 |
| AT1G30590.2 | Thale cress | cytosol | 66.56 | 67.22 |
| CDX84284 | Canola | cytosol | 65.42 | 66.83 |
| CDY31637 | Canola | cytosol | 62.81 | 66.04 |
| Bra005396.1-P | Field mustard | cytosol | 64.11 | 62.58 |
| AT2G39240.1 | Thale cress | cytosol | 57.75 | 61.78 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 54.0 | 52.79 |
| KRH39395 | Soybean | cytosol | 51.39 | 50.16 |
| KRH07819 | Soybean | cytosol | 50.24 | 49.12 |
| Solyc02g082340.2.1 | Tomato | nucleus | 45.68 | 45.38 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 46.0 | 44.62 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 44.54 | 43.4 |
| Os06t0688100-02 | Rice | cytosol | 43.39 | 42.77 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 40.78 | 42.09 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 12.4 | 41.3 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 42.09 | 40.89 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 42.41 | 40.88 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 40.46 | 39.18 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 40.29 | 39.14 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 40.29 | 39.08 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 40.29 | 39.08 |
| KXG20689 | Sorghum | cytosol | 39.15 | 38.65 |
| Zm00001d014575_P002 | Maize | cytosol | 40.13 | 37.27 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 31.97 | 33.45 |
| Zm00001d036138_P002 | Maize | cytosol | 11.91 | 30.29 |
Protein Annotations
| MapMan:15.2.1 | EntrezGene:818040 | UniProt:A0A178VT28 | ProteinID:AEC09018.1 | ArrayExpress:AT2G34750 | EnsemblPlantsGene:AT2G34750 |
| RefSeq:AT2G34750 | TAIR:AT2G34750 | RefSeq:AT2G34750-TAIR-G | EnsemblPlants:AT2G34750.1 | TAIR:AT2G34750.1 | EMBL:AY096642 |
| EMBL:AY142672 | GO:GO:0001042 | GO:GO:0001180 | GO:GO:0001181 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006356 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| RefSeq:NP_850236.1 | ProteinID:OAP09006.1 | PFAM:PF05327 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12790 | UniProt:Q8L643 |
| InterPro:RNA_pol_I_trans_ini_fac_RRN3 | UniParc:UPI00000AC524 | SEG:seg | : | : | : |
Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
Coordinates
chr2:-:14660217..14664404
Molecular Weight (calculated)
69049.4 Da
IEP (calculated)
4.647
GRAVY (calculated)
-0.022
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.