Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- golgi 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43658 | Canola | cytosol | 96.66 | 95.54 |
| Bra022989.1-P | Field mustard | cytosol | 78.43 | 80.31 |
| AT2G34750.1 | Thale cress | cytosol | 73.08 | 71.29 |
| Bra005396.1-P | Field mustard | cytosol | 73.24 | 69.75 |
| VIT_04s0044g01700.t01 | Wine grape | cytosol | 52.34 | 49.92 |
| KRH07819 | Soybean | cytosol | 47.83 | 45.61 |
| KRH39395 | Soybean | cytosol | 47.83 | 45.54 |
| Solyc02g082340.2.1 | Tomato | nucleus | 45.48 | 44.08 |
| GSMUA_Achr3P11670_001 | Banana | cytosol | 45.65 | 43.2 |
| GSMUA_Achr1P19720_001 | Banana | cytosol | 44.82 | 42.61 |
| Os06t0688100-02 | Rice | cytosol | 42.31 | 40.68 |
| TraesCS6A01G171400.1 | Wheat | cytosol | 38.96 | 39.23 |
| VIT_04s0044g01800.t01 | Wine grape | cytosol, extracellular, nucleus | 11.71 | 38.04 |
| TraesCS6D01G161100.3 | Wheat | cytosol | 40.3 | 37.89 |
| TraesCS6B01G199600.1 | Wheat | cytosol | 39.97 | 37.88 |
| TraesCS7A01G440500.1 | Wheat | cytosol | 39.63 | 37.5 |
| TraesCS7B01G339300.1 | Wheat | cytosol | 39.46 | 37.34 |
| TraesCS7D01G430000.2 | Wheat | cytosol | 39.3 | 37.24 |
| KXG20689 | Sorghum | cytosol | 38.46 | 37.04 |
| HORVU7Hr1G100370.1 | Barley | cytosol | 38.96 | 36.81 |
| Zm00001d014575_P002 | Maize | cytosol | 37.96 | 34.39 |
| TraesCS4B01G109300.1 | Wheat | cytosol | 32.27 | 32.94 |
| Zm00001d036138_P002 | Maize | cytosol | 11.37 | 28.22 |
Protein Annotations
| EnsemblPlants:Bra021928.1 | EnsemblPlants:Bra021928.1-P | EnsemblPlantsGene:Bra021928 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold |
| InterPro:RNA_pol_I_trans_ini_fac_RRN3 | PANTHER:PTHR12790 | PFAM:PF05327 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0002543A98 |
| UniProt:M4DZI1 | MapMan:15.2.1 | : | : | : | : |
Description
AT2G34750 (E=1e-226) | RNA polymerase I specific transcription initiation factor RRN3 family protein
Coordinates
chrA04:-:15239476..15242729
Molecular Weight (calculated)
67688.7 Da
IEP (calculated)
4.496
GRAVY (calculated)
-0.054
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASEVLTDP SSLYDVGNGE YSDTYTMLTV RNALASVQNG ESDRYEELVQ SMQIIKGADH AVWADLVTIL NALSGSVACI DIIHHRKLLS SVFGMSLWDL
101: KPHVMEALVG LLISLAATSG KYLDSCLNML IGHFIPPRWV IDRLSQRRVI DQKTDVLSQV HGAILKITLL VPLAPSRLLP MLAQQMPKIN KKDNVVVIYV
201: ENLFKLESSP IGQVGSSMIF MMVMERLRDL DLEIDWDDIL QDDSSRGMFD MELEDAMNEG EENTSGGNVV FESLDKLMVI SFDHLESCNL DGRLDQVFEK
301: LFGAFENFIL NTYKSKVSQF LMFYACSLDP ENCGVKFASK LMDIFLSSNK PRPTRQMSAV AYLASYLARG KFLPVSYVAT MLKRLVDECA DYCRTCNDDI
401: RPEAHQIFYS GCQAIMYVLC FRMRSILNVP LFRSQLRPLE SILMHRLNPL MVCLPSVVAE FLKQAKAGGM FVVSDAFIFD DLLESELSRA FGGPERLDTF
501: FPFDSCLLKS SNSYISPNFI YWSMVRPTYE EDDDDEEDAE IIVNGDEESD EEEEEGDLDY SMNKMSITPK HSFKNKMERD RLLKMPSMIR PSISPQSF
101: KPHVMEALVG LLISLAATSG KYLDSCLNML IGHFIPPRWV IDRLSQRRVI DQKTDVLSQV HGAILKITLL VPLAPSRLLP MLAQQMPKIN KKDNVVVIYV
201: ENLFKLESSP IGQVGSSMIF MMVMERLRDL DLEIDWDDIL QDDSSRGMFD MELEDAMNEG EENTSGGNVV FESLDKLMVI SFDHLESCNL DGRLDQVFEK
301: LFGAFENFIL NTYKSKVSQF LMFYACSLDP ENCGVKFASK LMDIFLSSNK PRPTRQMSAV AYLASYLARG KFLPVSYVAT MLKRLVDECA DYCRTCNDDI
401: RPEAHQIFYS GCQAIMYVLC FRMRSILNVP LFRSQLRPLE SILMHRLNPL MVCLPSVVAE FLKQAKAGGM FVVSDAFIFD DLLESELSRA FGGPERLDTF
501: FPFDSCLLKS SNSYISPNFI YWSMVRPTYE EDDDDEEDAE IIVNGDEESD EEEEEGDLDY SMNKMSITPK HSFKNKMERD RLLKMPSMIR PSISPQSF
001: MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
101: MKLWDHRPDV MDALVNLVIS LAVTSGKYLD SCLNMLVSNF VPPPWVVNNL SHSRILNKKI DVLSRVHAAL LKISILVPLT PSRLVPMLFQ QMPKMHKKDH
201: SIVIYVESLL KLENSSIGQV GGSMILGMVM ERLRDLDLEI EWDDIPQDDS SRGMFDMELE DAAEGTMNDG DELPVGPLKQ DTSDGSIVSK LLDKLMVVAF
301: EHLESCQNDG RLDQVFESLF KSFENFILNT YKSKFTQFLI FYACSLDPEN CGVKFASKLV EIFLSSNKHV ATRMSAVAYL ASFLARGKFL PVSFVASMLK
401: RLIDECVGYC RTCNDDTRPE AHQIFFSGCQ AIMYVLCFRM RSILDVPRFR SQLTPLESIL MHKLNPLMVC LPSVVAEFLR QAKEGGLFIV SDSFIFDDLL
501: ESELSRAFGG FERLDTFFPF DPCLLKSSNS FISPNFIYWS MVKATYDEDD DDNDAEVIVN GDEDSDEDDE ADLDYALNKM SITPKHSFKN KMERDRLLRM
601: PSRIRPSTSP ESL
Arabidopsis Description
RNA polymerase I specific transcription initiation factor RRN3 protein [Source:UniProtKB/TrEMBL;Acc:Q8L643]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.