Factsheet for Zm00001d014575_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20689	Sorghum	cytosol	80.0	85.02
Zm00001d036138_P002	Maize	cytosol	27.27	74.69
Os06t0688100-02	Rice	cytosol	68.33	72.51
TraesCS6A01G171400.1	Wheat	cytosol	61.97	68.86
TraesCS6D01G161100.3	Wheat	cytosol	65.15	67.61
TraesCS7D01G430000.2	Wheat	cytosol	63.03	65.93
TraesCS6B01G199600.1	Wheat	cytosol	63.03	65.93
TraesCS7B01G339300.1	Wheat	cytosol	62.58	65.35
HORVU7Hr1G100370.1	Barley	cytosol	62.42	65.09
TraesCS7A01G440500.1	Wheat	cytosol	62.27	65.03
TraesCS4B01G109300.1	Wheat	cytosol	48.48	54.61
GSMUA_Achr3P11670_001	Banana	cytosol	50.3	52.53
GSMUA_Achr1P19720_001	Banana	cytosol	49.7	52.15
VIT_04s0044g01700.t01	Wine grape	cytosol	41.06	43.22
CDY71933	Canola	cytosol	22.73	43.1
KRH39395	Soybean	cytosol	40.91	42.99
KRH07819	Soybean	cytosol	40.61	42.74
AT2G34750.1	Thale cress	cytosol	37.27	40.13
Bra022989.1-P	Field mustard	cytosol	35.3	39.9
Solyc02g082340.2.1	Tomato	nucleus	36.67	39.22
CDX84629	Canola	cytosol	36.21	38.99
CDX79576	Canola	cytosol	35.45	38.49
CDY43658	Canola	cytosol	35.15	38.35
Bra021928.1-P	Field mustard	nucleus	34.39	37.96
AT1G30590.2	Thale cress	cytosol	34.85	37.89
AT2G39240.1	Thale cress	cytosol	31.36	36.13
CDY31637	Canola	cytosol	31.52	35.68
CDX84284	Canola	cytosol	32.12	35.33
Bra005396.1-P	Field mustard	cytosol	32.58	34.24
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	8.18	29.35
CDY36511	Canola	plastid	7.88	19.26

Protein Annotations

EntrezGene:100272544	MapMan:15.2.1	UniProt:A0A1D6GUA9	ProteinID:AQK66571.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PF05327
PANTHER:PTHR12790	InterPro:RNA_pol_I_trans_ini_fac_RRN3	UniParc:UPI0008438F41	EnsemblPlantsGene:Zm00001d014575	EnsemblPlants:Zm00001d014575_P002	EnsemblPlants:Zm00001d014575_T002
SEG:seg	:	:	:	:	:

Description

RNA polymerase I specific transcription initiation factor RRN3 protein

Coordinates

chr5:-:54058740..54067786

Molecular Weight (calculated)

75817.4 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.170

Length

660 amino acids

Sequence
(BLAST)

001: MGAEQGYEDM QGTFRDSEVF EFVGKVLQSV RMDPFLIDIR DKDYYDYMLG IIDPTKKRST DDEAMFVTIL RALSQAVSKI DTVYHHALLH NIFTMCVWHL
101: HSDTRVVFLD LITRLAAVAD QYLRECLQML VNNFTPPGPL IRYIEEPRWL PKKEKIYSQL QESLKMISDT VPLAPRMLKD IIDRSMPKLF DSKAKMVSFV
201: KCMLGLDAVV WDIIGSSLLE KVVYLLTELD VNITWEDILQ DEHNKGIFDM ELEDLAEDED NLGQEGTKVH FGGNMCAEKL DGLMVVVCEH LKSRVEEPER
301: LIKWKLSGPP GQPKPQGNVR GTVLSGSQGL NQEFVTLKAI FKSHVLRVHK SKFAQFIMFY ACSLHPEIGD GFANFLTDIF IDKDKNEDAI TRVSAVSYVG
401: SYLSRARFIS CIYDFCICSV HLRFMLCYVL RLVDWCDYYC GHQLDNGVTA NPIKHQLFYA SCQAVMYVLC FRLRSIMDYP NLKQQLFRMR IRDILVHPLQ
501: PLKVCLPSIV NEFLRQATAA SLFHAPAISM HEDAVESDLS KAFGGLNRLD MFFPFDPYLL KESDRYIRPN FEFWSLVKTT YSNDNSDEDD EELGDIDAPG
601: MNVGSLDDHF EIDFNSDDDI EYKMNKMSIT PQRTFYHPLA TNSESNRMPA RIRPSVSPPS

Best Arabidopsis Sequence Match ( AT1G30590.1 )
(BLAST)

001: MGAEEFPSVP FNSNAMDNAE YTDTDLVFAV RKALASVQNG DTDDYSQLKT VMCLTEDADF DAVAQLETVL KSLSVSVAWI DLVHHKDLLE AMSLWYHSHR
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:TAIR;Acc:AT1G30590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.