CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G39240.1	Thale cress	cytosol	65.23	39.62
CDX84629	Canola	cytosol	67.24	38.17
CDX79576	Canola	cytosol	65.8	37.66
CDY43658	Canola	cytosol	64.94	37.36
CDY31637	Canola	cytosol	62.36	37.22
CDX84284	Canola	cytosol	64.08	37.17
VIT_04s0044g01700.t01	Wine grape	cytosol	54.02	29.98
KRH39395	Soybean	cytosol	49.71	27.55
GSMUA_Achr3P11670_001	Banana	cytosol	49.71	27.37
KRH07819	Soybean	cytosol	48.85	27.11
GSMUA_Achr1P19720_001	Banana	cytosol	47.99	26.55
TraesCS6A01G171400.1	Wheat	cytosol	45.11	26.43
Os06t0688100-02	Rice	cytosol	45.69	25.56
Solyc02g082340.2.1	Tomato	nucleus	43.97	24.8
TraesCS6B01G199600.1	Wheat	cytosol	44.83	24.72
TraesCS6D01G161100.3	Wheat	cytosol	44.83	24.53
CDY36511	Canola	plastid	18.97	24.44
KXG20689	Sorghum	cytosol	43.39	24.32
TraesCS7D01G430000.2	Wheat	cytosol	43.1	23.77
TraesCS7A01G440500.1	Wheat	cytosol	43.1	23.73
TraesCS7B01G339300.1	Wheat	cytosol	43.1	23.73
HORVU7Hr1G100370.1	Barley	cytosol	42.82	23.54
Zm00001d014575_P002	Maize	cytosol	43.1	22.73
TraesCS4B01G109300.1	Wheat	cytosol	36.49	21.67
Zm00001d036138_P002	Maize	cytosol	7.76	11.2
VIT_04s0044g01800.t01	Wine grape	cytosol, extracellular, nucleus	2.3	4.35

Protein Annotations

EnsemblPlants:CDY71933	EnsemblPlantsGene:GSBRNA2T00022646001	InterPro:RNA_pol_I_trans_ini_fac_RRN3	PANTHER:PTHR12790	PFAM:PF05327	ProteinID:CDY71933
ProteinID:CDY71933.1	SEG:seg	UniParc:UPI0004EE6DA8	UniProt:A0A078JWA5	MapMan:15.2.1	:

Description

BnaCnng75170DBnaCnng75170D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JWA5]

Coordinates

chrLK048197:+:3..2255

Molecular Weight (calculated)

39800.5 Da

IEP (calculated)

4.457

GRAVY (calculated)

-0.107

Length

348 amino acids

Sequence
(BLAST)

001: IERDDIPQDD STLGLFDMEL EVAVEETMNE GEELLDKLMV LSFEHLESCQ NAGRLDEVFE ILFDLFENLI LTTCKPKFPQ FLLFYACSLD PEDCGVKFAS
101: KLLAIFLSSN KDRVTRTNAV DYLASYLSRG KFLHASFVAR ILKRLVDECA DYCRTYNVGA SSGHLVFYSG CQAIMYVLCF RMRSILDVPR FQLLLTPLES
201: VLYHKLNPLK ECNPYVVSEF LKQAKAGGLF IVSEAFIFGD LPESETSRAF GGFFSFDPCL FKISNSFISP NFIYWSMVKR THDEDEAFAE VIVYGDTDND
301: EDYDDDPVLD NDVKRMSITP KQSYMRDTWR LSKMPSRIRP STSPSQSL

Best Arabidopsis Sequence Match ( AT1G30590.1 )
(BLAST)

001: MGAEEFPSVP FNSNAMDNAE YTDTDLVFAV RKALASVQNG DTDDYSQLKT VMCLTEDADF DAVAQLETVL KSLSVSVAWI DLVHHKDLLE AMSLWYHSHR
101: PSVMDALVDL IISLAATSGK YLDPCLNMLV RNFSQPTFKH KVSQTQLVKK MQEVHPRVHA ALHKISYLIP LAPWNLVSIL AQNMRKIDKK DPSIVTYVDN
201: LLRLENSSIG EVVGSVILMM VMERMLDLDL VSGCDDSNGG MFDMELEDAV ESTMNEGDEF PVGALKQNTS GGNVVSELLD KLMVLFFHHL ESCQNSDRLD
301: EVFEILFKSF ENYILNTYKT KFSQFLMFYA CSLDPENCGV RFASKLLDIY LSSNTCRLTR MSAVAYLASY LSRGKFLPAS FVASMLKRLV DECAEYCGTC
401: NDDVKPEAHQ VFYSGCQAIL YVLCFRMRSI VEIPRFQSQF RSLESILSHK LNPLLVCLPS VVSEFLKQAK AGGLFIVSES FIFDDLHESE LSRAFGGFER
501: LDTFFPFDPC LLKMSSSYIS PNFNFWSMVK TTYGEDGDEE LCDEVIVNGD ADSAEEPDDD VELDSEMNTM STTPKHSFMR ETERLLKMPS RIRPSTSPPE
601: SFLI

Arabidopsis Description

RNA polymerase I specific transcription initiation factor RRN3 protein [Source:TAIR;Acc:AT1G30590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.