Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 93.83 | 94.67 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 93.83 | 94.67 |
| Os09t0493600-01 | Rice | plastid | 71.37 | 72.0 |
| EER99115 | Sorghum | plastid | 67.84 | 68.14 |
| Zm00001d020971_P002 | Maize | plastid | 67.4 | 64.83 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 51.1 | 52.73 |
| CDY43388 | Canola | extracellular | 44.49 | 52.33 |
| AT3G12930.1 | Thale cress | plastid | 48.46 | 46.22 |
| PGSC0003DMT400056899 | Potato | plastid | 46.26 | 45.06 |
| Bra039355.1-P | Field mustard | plastid | 46.26 | 44.87 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 43.17 | 44.75 |
| Bra034716.1-P | Field mustard | plastid | 46.7 | 44.73 |
| CDY60119 | Canola | plastid | 46.7 | 44.73 |
| Solyc07g066460.2.1 | Tomato | plastid | 45.81 | 44.64 |
| KRH13673 | Soybean | plastid | 47.14 | 44.58 |
| CDY23554 | Canola | plastid | 46.26 | 44.3 |
| CDY24236 | Canola | plastid | 45.81 | 43.88 |
| KRH43792 | Soybean | plastid | 46.7 | 39.26 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G271400.1 | EnsemblPlantsGene:TraesCS5A01G271400 | Gene3D:3.30.460.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | HAMAP:MF_01477 | InterPro:Iojap/RsfS/C7orf30 | PANTHER:PTHR21043 |
| PANTHER:PTHR21043:SF1 | PFAM:PF02410 | SEG:seg | SUPFAM:SSF81301 | TIGRFAMs:TIGR00090 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5A:-:481896862..481899682
Molecular Weight (calculated)
24551.2 Da
IEP (calculated)
5.654
GRAVY (calculated)
-0.074
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGAAIQGQG HGLARAPPAA VPLLHPRPRR AVGAVPRHRL RSDFLPLLLP TAAPFRARSP PSSSSSNVNP GTGEGADELL EELLQKHGEV VYSSGGASSA
101: ALASEADEDA ECLSLAVSLA KVASEVKAAD IRVLFVKPIV YWTEFFIILT AFSNAQIEAI SSKMRDIGEQ KFSRVASGDT KPNSWTLLDF GDVVVHIFLP
201: PQREFYNLEE FYGNATPIEL PFETQLQ
101: ALASEADEDA ECLSLAVSLA KVASEVKAAD IRVLFVKPIV YWTEFFIILT AFSNAQIEAI SSKMRDIGEQ KFSRVASGDT KPNSWTLLDF GDVVVHIFLP
201: PQREFYNLEE FYGNATPIEL PFETQLQ
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.