Factsheet for TraesCS2B01G126400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G108900.1	Wheat	mitochondrion	98.09	98.72
TraesCS2A01G108800.1	Wheat	mitochondrion	80.25	77.78
HORVU2Hr1G018600.1	Barley	mitochondrion	94.9	68.35
TraesCS4B01G167700.1	Wheat	mitochondrion	65.61	64.78
GSMUA_Achr10P...	Banana	cytosol	53.5	54.55
KRH73223	Soybean	cytosol	54.14	54.49
KRH14875	Soybean	cytosol	53.5	53.85
VIT_08s0058g00960.t01	Wine grape	mitochondrion	52.87	53.21
VIT_13s0067g02280.t01	Wine grape	cytosol	53.5	52.83
KRH65496	Soybean	mitochondrion	49.68	52.0
KRH76078	Soybean	mitochondrion	49.04	51.33
KRH31215	Soybean	cytosol	50.96	50.96
VIT_06s0004g07700.t01	Wine grape	mitochondrion	51.59	50.62
KRG97660	Soybean	cytosol	50.32	50.32
Solyc06g050840.2.1	Tomato	cytosol	47.77	47.17
PGSC0003DMT400071914	Potato	cytosol	47.77	46.88
AT2G40435.1	Thale cress	mitochondrion, nucleus	46.5	46.2
KRH40793	Soybean	cytosol	44.59	46.05
KRH00396	Soybean	nucleus	44.59	46.05
CDY06993	Canola	nucleus	33.76	43.8
KRH17139	Soybean	mitochondrion	43.95	43.4
CDY52931	Canola	cytosol, mitochondrion	38.85	43.26
Bra004568.1-P	Field mustard	nucleus	43.31	43.04
CDX79988	Canola	nucleus	43.31	43.04
AT3G56220.1	Thale cress	nucleus	42.68	42.95
CDY71264	Canola	cytosol	42.68	42.68
Bra003232.1-P	Field mustard	cytosol	42.68	42.68
CDX67638	Canola	cytosol	42.68	42.68
CDY32003	Canola	cytosol	42.68	42.68
Bra007228.1-P	Field mustard	cytosol	42.04	42.04
CDY27232	Canola	cytosol	42.04	42.04
CDY23908	Canola	nucleus	42.04	41.51
CDY45386	Canola	cytosol	42.04	41.25
KRH72775	Soybean	mitochondrion	41.4	41.14
CDX72157	Canola	cytosol	40.76	40.76
KRH30146	Soybean	mitochondrion	40.76	40.25
CDX76055	Canola	cytosol	37.58	38.06
Bra016997.1-P	Field mustard	cytosol	26.11	37.96
Bra014704.1-P	Field mustard	cytosol	38.85	37.89
Bra017003.1-P	Field mustard	cytosol	30.57	37.8
CDY43345	Canola	cytosol	31.85	36.23
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	37.58	33.52
Solyc09g018500.1.1	Tomato	cytosol	37.58	33.33
CDX93181	Canola	cytosol	19.11	31.25
KRG98184	Soybean	extracellular, plastid	33.76	30.64

Protein Annotations

EnsemblPlants:TraesCS2B01G126400.1	EnsemblPlantsGene:TraesCS2B01G126400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF43	SEG:seg
SUPFAM:SSF47459	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:94661054..94662380

Molecular Weight (calculated)

16888.0 Da

IEP (calculated)

6.004

GRAVY (calculated)

-0.276

Length

157 amino acids

Sequence
(BLAST)

001: MSRERKKAAA LQEKMQILRS ITHSHALSNP SIVMDASEYI KGLKQKIARL NQEIAREEGT HSHKQNSFPT VSVEALGHGF LVNVSSDKSC PGLLVAVLEA
101: FEELGLTVLQ ATASCADTFR LEAVGGGENQ AGSVDEDVIR RAVQQAITNC GAEQGDQ

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.