CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14875	Soybean	cytosol	97.44	97.44
KRH31215	Soybean	cytosol	78.85	78.34
KRG97660	Soybean	cytosol	76.92	76.43
VIT_13s0067g02280.t01	Wine grape	cytosol	73.72	72.33
Os07t0676600-01	Rice	cytosol	63.46	63.06
KRH40793	Soybean	cytosol	59.62	61.18
KRH65496	Soybean	mitochondrion	58.33	60.67
KRH76078	Soybean	mitochondrion	57.69	60.0
Solyc06g050840.2.1	Tomato	cytosol	60.9	59.75
Os03t0338400-01	Rice	nucleus	62.18	59.51
PGSC0003DMT400071914	Potato	cytosol	60.9	59.38
KRH00396	Soybean	nucleus	57.69	59.21
AT2G40435.1	Thale cress	mitochondrion, nucleus	59.62	58.86
EER92303	Sorghum	mitochondrion	60.9	57.93
AT3G56220.1	Thale cress	nucleus	57.05	57.05
CDY23908	Canola	nucleus	57.69	56.6
CDY32003	Canola	cytosol	56.41	56.05
Bra003232.1-P	Field mustard	cytosol	56.41	56.05
CDY71264	Canola	cytosol	56.41	56.05
CDX67638	Canola	cytosol	56.41	56.05
Bra004568.1-P	Field mustard	nucleus	56.41	55.7
CDX79988	Canola	nucleus	56.41	55.7
Os05t0337200-01	Rice	cytosol, mitochondrion	54.49	55.56
Zm00001d029078_P002	Maize	mitochondrion	58.33	55.49
CDY27232	Canola	cytosol	55.77	55.41
Bra007228.1-P	Field mustard	cytosol	55.77	55.41
CDX72157	Canola	cytosol	55.77	55.41
TraesCS4A01G136800.2	Wheat	mitochondrion	56.41	55.0
TraesCS4B01G167700.1	Wheat	mitochondrion	55.77	54.72
Zm00001d047512_P002	Maize	cytosol, mitochondrion	58.97	54.44
KXG36938	Sorghum	cytosol	59.62	54.39
CDY45386	Canola	cytosol	55.77	54.38
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	55.77	54.38
TraesCS2B01G126400.1	Wheat	mitochondrion	54.49	54.14
HORVU4Hr1G049550.2	Barley	mitochondrion	55.13	54.09
TraesCS2D01G108900.1	Wheat	mitochondrion	53.85	53.85
CDY52931	Canola	cytosol, mitochondrion	47.44	52.48
CDY06993	Canola	nucleus	40.38	52.07
Bra017003.1-P	Field mustard	cytosol	41.03	50.39
Zm00001d000400_P001	Maize	nucleus	53.21	49.4
CDX76055	Canola	cytosol	48.72	49.03
CDY43345	Canola	cytosol	42.95	48.55
KRH17139	Soybean	mitochondrion	49.36	48.43
Bra016997.1-P	Field mustard	cytosol	33.33	48.15
Bra014704.1-P	Field mustard	cytosol	49.36	47.83
TraesCS2A01G108800.1	Wheat	mitochondrion	49.36	47.53
KRH30146	Soybean	mitochondrion	48.08	47.17
KRH72775	Soybean	mitochondrion	46.79	46.2
OQU77760	Sorghum	mitochondrion	57.69	44.34
CDX93181	Canola	cytosol	26.28	42.71
HORVU2Hr1G018600.1	Barley	mitochondrion	54.49	38.99
KRG98184	Soybean	extracellular, plastid	37.18	33.53

Protein Annotations

EMBL:ACUP02001272	EMBL:BT090274	EnsemblPlants:KRH73223	EnsemblPlantsGene:GLYMA_02G259800	EntrezGene:100306253	Gene3D:4.10.280.10
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	ProteinID:KRH73223	ProteinID:KRH73223.1	SUPFAM:SSF47459
UniParc:UPI0001B1593F	UniProt:C6SYM6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:44662823..44664812

Molecular Weight (calculated)

17427.9 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.275

Length

156 amino acids

Sequence
(BLAST)

001: MVSKEQKRAA LHEKLQNLRS ITNSHALNKT SIIVDASKYI EKLKQKVERL NQEIASAETS SVHNPLPMVT VETLEKGFLI NVFSAKGCSG LLVSILEAFE
101: EMRLTVLEAR VSCTDTFRFQ AVGENEEQVE TIDAHVVKQA VVQAIKNWSK SGDQEE

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.