CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007228.1-P	Field mustard	cytosol	100.0	100.0
CDX72157	Canola	cytosol	92.99	92.99
CDX67638	Canola	cytosol	89.17	89.17
CDY71264	Canola	cytosol	89.17	89.17
CDY32003	Canola	cytosol	89.17	89.17
AT3G56220.1	Thale cress	nucleus	78.34	78.85
CDY43345	Canola	cytosol	61.15	69.57
CDX76055	Canola	cytosol	67.52	68.39
CDX79988	Canola	nucleus	66.24	65.82
CDY45386	Canola	cytosol	63.69	62.5
CDY52931	Canola	cytosol, mitochondrion	56.05	62.41
CDY23908	Canola	nucleus	62.42	61.64
CDY06993	Canola	nucleus	45.86	59.5
KRH73223	Soybean	cytosol	55.41	55.77
KRH14875	Soybean	cytosol	54.78	55.13
KRG97660	Soybean	cytosol	54.78	54.78
KRH31215	Soybean	cytosol	54.14	54.14
VIT_13s0067g02280.t01	Wine grape	cytosol	52.87	52.2
Solyc06g050840.2.1	Tomato	cytosol	52.23	51.57
PGSC0003DMT400071914	Potato	cytosol	50.96	50.0
CDX93181	Canola	cytosol	29.3	47.92
Os07t0676600-01	Rice	cytosol	47.13	47.13
EER92303	Sorghum	mitochondrion	48.41	46.34
Os03t0338400-01	Rice	nucleus	47.77	46.01
TraesCS4A01G136800.2	Wheat	mitochondrion	46.5	45.62
TraesCS4B01G167700.1	Wheat	mitochondrion	45.86	45.28
Zm00001d029078_P002	Maize	mitochondrion	47.13	45.12
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	45.86	45.0
HORVU4Hr1G049550.2	Barley	mitochondrion	44.59	44.03
Zm00001d047512_P002	Maize	cytosol, mitochondrion	47.13	43.79
TraesCS2D01G108900.1	Wheat	mitochondrion	42.04	42.31
TraesCS2B01G126400.1	Wheat	mitochondrion	42.04	42.04
Os05t0337200-01	Rice	cytosol, mitochondrion	40.76	41.83
KXG36938	Sorghum	cytosol	45.22	41.52
TraesCS2A01G108800.1	Wheat	mitochondrion	38.85	37.65
Zm00001d000400_P001	Maize	nucleus	38.85	36.31
OQU77760	Sorghum	mitochondrion	40.76	31.53
HORVU2Hr1G018600.1	Barley	mitochondrion	42.04	30.28

Protein Annotations

EnsemblPlants:CDY27232	EnsemblPlantsGene:GSBRNA2T00037106001	GO:A0A078GPV6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8
ProteinID:CDY27232	ProteinID:CDY27232.1	SUPFAM:SSF47459	UniParc:UPI0002542B25	UniProt:A0A078GPV6	MapMan:35.2

Description

BnaA09g35700DBnaA09g35700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPV6]

Coordinates

chrLK032201:-:266384..267977

Molecular Weight (calculated)

17561.8 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.410

Length

157 amino acids

Sequence
(BLAST)

001: MVSKEYKRDS SLREKFQLLR SITNSHAESE TSIIEDASKY IKKLKHKVEK INNETTSEQY FCDPTDPMVT VETLEKGFMI KVMSSKNEPG MLVCVLEVFE
101: DLGLEVVEAR VSCKDSFSLH AIGISNNDDC ESMDGEVVKQ AVAVAVSTWS DSQDPKG

Best Arabidopsis Sequence Match ( AT3G56220.1 )
(BLAST)

001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA

Arabidopsis Description

At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.