CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79988	Canola	nucleus	86.79	87.34
AT2G40435.1	Thale cress	mitochondrion, nucleus	75.47	75.95
CDY45386	Canola	cytosol	70.44	70.0
CDY52931	Canola	cytosol, mitochondrion	58.49	65.96
CDY06993	Canola	nucleus	48.43	63.64
CDX67638	Canola	cytosol	61.64	62.42
CDX72157	Canola	cytosol	61.64	62.42
CDY71264	Canola	cytosol	61.64	62.42
CDY27232	Canola	cytosol	61.64	62.42
CDY32003	Canola	cytosol	61.64	62.42
KRH31215	Soybean	cytosol	58.49	59.24
CDX93181	Canola	cytosol	35.22	58.33
KRH73223	Soybean	cytosol	56.6	57.69
CDX76055	Canola	cytosol	55.97	57.42
KRG97660	Soybean	cytosol	56.6	57.32
VIT_13s0067g02280.t01	Wine grape	cytosol	56.6	56.6
KRH14875	Soybean	cytosol	55.35	56.41
CDY43345	Canola	cytosol	45.28	52.17
Solyc06g050840.2.1	Tomato	cytosol	49.69	49.69
PGSC0003DMT400071914	Potato	cytosol	49.06	48.75
Os03t0338400-01	Rice	nucleus	48.43	47.24
Os07t0676600-01	Rice	cytosol	46.54	47.13
EER92303	Sorghum	mitochondrion	48.43	46.95
Zm00001d029078_P002	Maize	mitochondrion	47.17	45.73
TraesCS4A01G136800.2	Wheat	mitochondrion	45.28	45.0
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	45.28	45.0
Zm00001d047512_P002	Maize	cytosol, mitochondrion	47.8	44.97
Os05t0337200-01	Rice	cytosol, mitochondrion	42.77	44.44
TraesCS4B01G167700.1	Wheat	mitochondrion	44.03	44.03
HORVU4Hr1G049550.2	Barley	mitochondrion	43.4	43.4
KXG36938	Sorghum	cytosol	46.54	43.27
TraesCS2B01G126400.1	Wheat	mitochondrion	41.51	42.04
TraesCS2D01G108900.1	Wheat	mitochondrion	40.88	41.67
TraesCS2A01G108800.1	Wheat	mitochondrion	38.36	37.65
Zm00001d000400_P001	Maize	nucleus	39.62	37.5
OQU77760	Sorghum	mitochondrion	42.14	33.0
HORVU2Hr1G018600.1	Barley	mitochondrion	40.25	29.36

Protein Annotations

EnsemblPlants:CDY23908	EnsemblPlantsGene:GSBRNA2T00024349001	GO:A0A078GGY4	InterPro:ACT_dom	InterPro:IPR002912	PANTHER:PTHR31945
PANTHER:PTHR31945:SF8	PFscan:PS51671	ProteinID:CDY23908	ProteinID:CDY23908.1	SUPFAM:SSF55021	UniParc:UPI0001CAA275
UniProt:A0A078GGY4	MapMan:35.2	:	:	:	:

Description

BnaC04g01290DBnaC04g01290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGY4]

Coordinates

chrLK032150:-:602912..604682

Molecular Weight (calculated)

17454.6 Da

IEP (calculated)

4.760

GRAVY (calculated)

-0.492

Length

159 amino acids

Sequence
(BLAST)

001: MDPREKKRGS LKEKFQLLRS ITNSHAENDT SIIMDASKYI KKLKKKVERF KGDTTAGQSS SEPTDPTIPM VTVETLEKGF MINVLAGKNQ PGMLVSVLEA
101: FEDIGLNVLD ARVSCTDSFS LHATGVENED GEGMDSEAVK QAVTDAIRSW SESNDLQIS

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.