CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014704.1-P	Field mustard	cytosol	91.61	88.2
CDY43345	Canola	cytosol	74.84	84.06
CDY27232	Canola	cytosol	68.39	67.52
CDX67638	Canola	cytosol	67.74	66.88
CDY32003	Canola	cytosol	67.74	66.88
CDY71264	Canola	cytosol	67.74	66.88
AT3G56220.1	Thale cress	nucleus	65.16	64.74
CDX72157	Canola	cytosol	65.16	64.33
CDY06993	Canola	nucleus	44.52	57.02
CDX79988	Canola	nucleus	58.06	56.96
CDY23908	Canola	nucleus	57.42	55.97
CDY45386	Canola	cytosol	57.42	55.62
CDY52931	Canola	cytosol, mitochondrion	50.32	55.32
KRH31215	Soybean	cytosol	50.32	49.68
KRG97660	Soybean	cytosol	50.32	49.68
KRH73223	Soybean	cytosol	49.03	48.72
KRH14875	Soybean	cytosol	48.39	48.08
VIT_13s0067g02280.t01	Wine grape	cytosol	48.39	47.17
Solyc06g050840.2.1	Tomato	cytosol	46.45	45.28
CDX93181	Canola	cytosol	27.74	44.79
PGSC0003DMT400071914	Potato	cytosol	45.81	44.38
Os05t0337200-01	Rice	cytosol, mitochondrion	41.94	42.48
Zm00001d029078_P002	Maize	mitochondrion	44.52	42.07
EER92303	Sorghum	mitochondrion	44.52	42.07
Os07t0676600-01	Rice	cytosol	42.58	42.04
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	42.58	41.25
Os03t0338400-01	Rice	nucleus	43.23	41.1
TraesCS4A01G136800.2	Wheat	mitochondrion	41.94	40.62
HORVU4Hr1G049550.2	Barley	mitochondrion	41.29	40.25
TraesCS4B01G167700.1	Wheat	mitochondrion	41.29	40.25
Zm00001d047512_P002	Maize	cytosol, mitochondrion	43.23	39.65
KXG36938	Sorghum	cytosol	43.23	39.18
TraesCS2D01G108900.1	Wheat	mitochondrion	38.06	37.82
TraesCS2B01G126400.1	Wheat	mitochondrion	38.06	37.58
Zm00001d000400_P001	Maize	nucleus	37.42	34.52
TraesCS2A01G108800.1	Wheat	mitochondrion	35.48	33.95
OQU77760	Sorghum	mitochondrion	40.0	30.54
HORVU2Hr1G018600.1	Barley	mitochondrion	38.06	27.06

Protein Annotations

EnsemblPlants:CDX76055	EnsemblPlantsGene:GSBRNA2T00126291001	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	ProteinID:CDX76055
ProteinID:CDX76055.1	SEG:seg	UniParc:UPI0004EF1BCF	MapMan:35.2	:	:

Description

BnaA04g03190D

Coordinates

chrLK031806:-:439416..440850

Molecular Weight (calculated)

17084.0 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.405

Length

155 amino acids

Sequence
(BLAST)

001: MVSRNKSDSS MRDKFQLLRT VTNSHAESET SIIADASKYI KNLKKKVEEI NNVTTSEQYF CDPTDPMVTV ETLENGFLIN ITSRKNDGGM LVCLLEAFED
101: LGLDVVEARV SCTDSFSMHA VGSSNNDDGS MDAEAVKHAV EVAVRTCSDG HDPKW

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.