Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 54.76 | 60.13 |
| OQU77760 | Sorghum | mitochondrion | 66.67 | 55.17 |
| Zm00001d029078_P002 | Maize | mitochondrion | 52.38 | 53.66 |
| KRH73223 | Soybean | cytosol | 49.4 | 53.21 |
| KRH14875 | Soybean | cytosol | 49.4 | 53.21 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 52.98 | 52.66 |
| KRG97660 | Soybean | cytosol | 46.43 | 49.68 |
| KRH31215 | Soybean | cytosol | 46.43 | 49.68 |
| VIT_13s0067g02280.t01 | Wine grape | cytosol | 45.83 | 48.43 |
| GSMUA_Achr10P... | Banana | cytosol | 44.05 | 48.05 |
| VIT_08s0058g00960.t01 | Wine grape | mitochondrion | 44.05 | 47.44 |
| KRH65496 | Soybean | mitochondrion | 41.07 | 46.0 |
| KRH40793 | Soybean | cytosol | 41.07 | 45.39 |
| KRH76078 | Soybean | mitochondrion | 39.88 | 44.67 |
| VIT_06s0004g07700.t01 | Wine grape | mitochondrion | 42.26 | 44.38 |
| KRH00396 | Soybean | nucleus | 39.29 | 43.42 |
| AT2G40435.1 | Thale cress | mitochondrion, nucleus | 40.48 | 43.04 |
| Solyc06g050840.2.1 | Tomato | cytosol | 40.48 | 42.77 |
| CDY45386 | Canola | cytosol | 40.48 | 42.5 |
| PGSC0003DMT400071914 | Potato | cytosol | 39.88 | 41.88 |
| KRH17139 | Soybean | mitochondrion | 39.29 | 41.51 |
| CDY52931 | Canola | cytosol, mitochondrion | 34.52 | 41.13 |
| AT3G56220.1 | Thale cress | nucleus | 38.1 | 41.03 |
| CDY71264 | Canola | cytosol | 38.1 | 40.76 |
| CDX67638 | Canola | cytosol | 38.1 | 40.76 |
| Bra003232.1-P | Field mustard | cytosol | 38.1 | 40.76 |
| CDY32003 | Canola | cytosol | 38.1 | 40.76 |
| CDY06993 | Canola | nucleus | 28.57 | 39.67 |
| CDY23908 | Canola | nucleus | 37.5 | 39.62 |
| CDX72157 | Canola | cytosol | 36.9 | 39.49 |
| Bra004568.1-P | Field mustard | nucleus | 36.9 | 39.24 |
| CDX79988 | Canola | nucleus | 36.9 | 39.24 |
| CDY27232 | Canola | cytosol | 36.31 | 38.85 |
| Bra007228.1-P | Field mustard | cytosol | 36.31 | 38.85 |
| KRH72775 | Soybean | mitochondrion | 35.71 | 37.97 |
| Bra017003.1-P | Field mustard | cytosol | 28.57 | 37.8 |
| CDX76055 | Canola | cytosol | 34.52 | 37.42 |
| KRH30146 | Soybean | mitochondrion | 34.52 | 36.48 |
| CDX93181 | Canola | cytosol | 20.83 | 36.46 |
| Bra016997.1-P | Field mustard | cytosol | 23.21 | 36.11 |
| Bra014704.1-P | Field mustard | cytosol | 33.33 | 34.78 |
| CDY43345 | Canola | cytosol | 27.38 | 33.33 |
| PGSC0003DMT400068342 | Potato | cytosol, nucleus, peroxisome | 33.33 | 31.82 |
| Solyc09g018500.1.1 | Tomato | cytosol | 33.33 | 31.64 |
| KRG98184 | Soybean | extracellular, plastid | 28.57 | 27.75 |
Protein Annotations
| EMBL:EU951861 | EnsemblPlants:Zm00001d000400_P001 | EnsemblPlants:Zm00001d000400_T001 | EnsemblPlantsGene:Zm00001d000400 | EntrezGene:100274843 | Gene3D:4.10.280.10 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR036638 |
| ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF43 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI000182B390 |
| UniProt:B6SGJ6 | MapMan:15.5.32 | : | : | : | : |
Description
Putative HLH DNA-binding domain superfamily protein
Coordinates
chrB73V4_ctg4:-:41986..43707
Molecular Weight (calculated)
17696.3 Da
IEP (calculated)
6.667
GRAVY (calculated)
0.036
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKEQNKRG ALHEKLKILR SVTHSHAGDK VSIIADASSY IKELKQKIAK LSQEMASSSP QHATTGVCQQ QPSSSSVSVG VLLDKKGRFL VSVFMDESCG
101: PPPAGLLASV LEAFDDIGLT VLEARATCAG SFRLEAVGEE VVVDGGLIID AHAVEQAVVQ AIKNCPAN
101: PPPAGLLASV LEAFDDIGLT VLEARATCAG SFRLEAVGEE VVVDGGLIID AHAVEQAVVQ AIKNCPAN
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
Arabidopsis Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.