Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g018500.1.1 | Tomato | cytosol | 84.09 | 83.62 |
| GSMUA_Achr5P29590_001 | Banana | cytosol | 40.34 | 58.2 |
| VIT_08s0058g00960.t01 | Wine grape | mitochondrion | 46.02 | 51.92 |
| KRH65496 | Soybean | mitochondrion | 42.05 | 49.33 |
| KRH76078 | Soybean | mitochondrion | 42.05 | 49.33 |
| KRH40793 | Soybean | cytosol | 41.48 | 48.03 |
| GSMUA_Achr11P... | Banana | cytosol | 38.07 | 46.21 |
| KRH00396 | Soybean | nucleus | 39.2 | 45.39 |
| Os07t0676600-01 | Rice | cytosol | 38.07 | 42.68 |
| PGSC0003DMT400071914 | Potato | cytosol | 37.5 | 41.25 |
| EER92303 | Sorghum | mitochondrion | 37.5 | 40.24 |
| Os03t0338400-01 | Rice | nucleus | 36.93 | 39.88 |
| TraesCS4D01G170400.1 | Wheat | cytosol, mitochondrion | 35.8 | 39.38 |
| TraesCS4A01G136800.2 | Wheat | mitochondrion | 35.8 | 39.38 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 34.09 | 39.22 |
| Zm00001d029078_P002 | Maize | mitochondrion | 36.36 | 39.02 |
| HORVU4Hr1G049550.2 | Barley | mitochondrion | 34.66 | 38.36 |
| TraesCS4B01G167700.1 | Wheat | mitochondrion | 34.66 | 38.36 |
| KXG36938 | Sorghum | cytosol | 36.93 | 38.01 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 36.36 | 37.87 |
| TraesCS2B01G126400.1 | Wheat | mitochondrion | 33.52 | 37.58 |
| TraesCS2D01G108900.1 | Wheat | mitochondrion | 32.95 | 37.18 |
| TraesCS2A01G108800.1 | Wheat | mitochondrion | 33.52 | 36.42 |
| Zm00001d000400_P001 | Maize | nucleus | 31.82 | 33.33 |
| OQU77760 | Sorghum | mitochondrion | 33.52 | 29.06 |
| HORVU2Hr1G018600.1 | Barley | mitochondrion | 32.95 | 26.61 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068342 | EnsemblPlantsGene:PGSC0003DMG400026576 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF8 |
| PGSC:PGSC0003DMG400026576 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002969C91 | UniProt:M1CIW7 | MapMan:35.2 |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026576]
Coordinates
chr9:+:13067161..13071220
Molecular Weight (calculated)
20320.5 Da
IEP (calculated)
5.051
GRAVY (calculated)
0.109
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKEQQKAL LNQQLEQLGS ITNSPSVNKT SIIAHASKYI EELKERIDKL NEDVSTSQPS HHDHEDALPE VTVETLEKGF IINVFSEKNC PGLLVSILEV
101: FEELGLELLD ARVSCSDCFR LEAVSDVRIS ISLFNLLPLL HFIFIFKFKY LFFSCLWKIE YFLYFLTASH FKFLFY
101: FEELGLELLD ARVSCSDCFR LEAVSDVRIS ISLFNLLPLL HFIFIFKFKY LFFSCLWKIE YFLYFLTASH FKFLFY
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLEVIN
101: FEDIGLNVLE ARASCTDSFS LHAMGLEVIN
Arabidopsis Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.