Factsheet for Os03t0338400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0676600-01	Rice	cytosol	76.69	79.62
EER92303	Sorghum	mitochondrion	77.91	77.44
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	75.46	76.88
TraesCS4A01G136800.2	Wheat	mitochondrion	75.46	76.88
Zm00001d029078_P002	Maize	mitochondrion	77.3	76.83
TraesCS4B01G167700.1	Wheat	mitochondrion	74.23	76.1
Zm00001d047512_P002	Maize	cytosol, mitochondrion	77.3	74.56
HORVU4Hr1G049550.2	Barley	mitochondrion	72.39	74.21
KRH73223	Soybean	cytosol	59.51	62.18
KRH14875	Soybean	cytosol	58.28	60.9
GSMUA_Achr10P...	Banana	cytosol	57.06	60.39
VIT_08s0058g00960.t01	Wine grape	mitochondrion	55.83	58.33
VIT_13s0067g02280.t01	Wine grape	cytosol	56.44	57.86
KRH31215	Soybean	cytosol	55.21	57.32
KRG97660	Soybean	cytosol	54.6	56.69
KRH65496	Soybean	mitochondrion	49.69	54.0
KRH76078	Soybean	mitochondrion	49.08	53.33
AT2G40435.1	Thale cress	mitochondrion, nucleus	51.53	53.16
VIT_06s0004g07700.t01	Wine grape	mitochondrion	52.15	53.12
Os05t0337200-01	Rice	cytosol, mitochondrion	49.69	52.94
Solyc06g050840.2.1	Tomato	cytosol	50.92	52.2
PGSC0003DMT400071914	Potato	cytosol	50.31	51.25
KRH40793	Soybean	cytosol	47.24	50.66
Bra003232.1-P	Field mustard	cytosol	48.47	50.32
CDY71264	Canola	cytosol	48.47	50.32
CDX67638	Canola	cytosol	48.47	50.32
CDY32003	Canola	cytosol	48.47	50.32
KRH00396	Soybean	nucleus	46.63	50.0
AT3G56220.1	Thale cress	nucleus	47.85	50.0
Bra004568.1-P	Field mustard	nucleus	47.85	49.37
CDX79988	Canola	nucleus	47.85	49.37
CDY23908	Canola	nucleus	47.24	48.43
CDY27232	Canola	cytosol	46.01	47.77
Bra007228.1-P	Field mustard	cytosol	46.01	47.77
CDY52931	Canola	cytosol, mitochondrion	41.1	47.52
CDY06993	Canola	nucleus	34.97	47.11
CDY45386	Canola	cytosol	46.01	46.88
CDX72157	Canola	cytosol	44.79	46.5
Bra017003.1-P	Field mustard	cytosol	34.97	44.88
Bra016997.1-P	Field mustard	cytosol	29.45	44.44
Os12t0111400-01	Rice	cytosol, nucleus, plastid	25.77	43.75
CDX76055	Canola	cytosol	41.1	43.23
KRH72775	Soybean	mitochondrion	41.72	43.04
KRH17139	Soybean	mitochondrion	41.72	42.77
Bra014704.1-P	Field mustard	cytosol	41.72	42.24
Os11t0111800-00	Rice	cytosol, nucleus, plastid	41.72	42.24
CDY43345	Canola	cytosol	35.58	42.03
KRH30146	Soybean	mitochondrion	39.26	40.25
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	39.88	36.93
Solyc09g018500.1.1	Tomato	cytosol	39.88	36.72
CDX93181	Canola	cytosol	21.47	36.46
KRG98184	Soybean	extracellular, plastid	31.9	30.06

Protein Annotations

MapMan:35.2	Gene3D:4.10.280.10	EntrezGene:4332778	ProteinID:ABF95837.1	EMBL:AK073378	ProteinID:BAF11969.1
ProteinID:BAS84103.1	ncoils:Coil	ProteinID:EEE59024.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	EMBL:GU120349
InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	EnsemblPlantsGene:Os03g0338400	EnsemblPlants:Os03t0338400-01	PANTHER:PTHR31945	PANTHER:PTHR31945:SF43
UniProt:Q10LR1	SUPFAM:SSF47459	UniParc:UPI0000DB4621	RefSeq:XP_015629044.1	SEG:seg	:

Description

basic helix-loop-helix protein 166Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os03t0338400-01)

Coordinates

chr3:+:12587548..12589765

Molecular Weight (calculated)

18026.4 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.312

Length

163 amino acids

Sequence
(BLAST)

001: MMSSRERKKA AALQEKLQIL RSITHSHALS NTSILMDASK YIKELKQKVV RLNQEIACAQ DALRQNRVTV ETLRHGFLVN VFSGKSCPGL LVSILEAFDE
101: LGLSVLEATA SCTDTFRLEA IGSENLMEKV DEHVVKQAVL RAIRSCSGSG GDHHDDDDDD DDE

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.