Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0111800-00 | Rice | cytosol, nucleus, plastid | 90.62 | 54.04 |
| KXG27598 | Sorghum | cytosol | 59.38 | 32.95 |
| Os07t0676600-01 | Rice | cytosol | 42.71 | 26.11 |
| Os03t0338400-01 | Rice | nucleus | 43.75 | 25.77 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 39.58 | 24.84 |
Protein Annotations
| EMBL:AK062951 | EnsemblPlants:Os12t0111400-01 | EnsemblPlantsGene:Os12g0111400 | EntrezGene:4351296 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF43 | ProteinID:ABA96216.2 | ProteinID:BAF28986.1 |
| ProteinID:BAT15562.1 | RefSeq:XP_015618980.1 | SEG:seg | UniParc:UPI0000D89BDF | UniProt:Q2QYP2 | MapMan:35.2 |
Description
basic helix-loop-helix protein 161Helix-loop-helix DNA-binding domain containing protein. (Os12t0111400-01)
Coordinates
chr12:+:599639..602697
Molecular Weight (calculated)
10469.5 Da
IEP (calculated)
7.362
GRAVY (calculated)
-0.577
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGKDQKKAA ALEEKLELLR SVTKSSAANE TSILVDASKY IKELKDKVSQ EPEQLGSTSS SMPMPRSEAA ERSVDEQMVR HAVLQAIKKC MDGSSI
001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNVN TVLPYHHFI
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNVN TVLPYHHFI
Arabidopsis Description
At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.