Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0111400-01 | Rice | cytosol, nucleus, plastid | 54.04 | 90.62 |
| KXG27598 | Sorghum | cytosol | 63.98 | 59.54 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 42.24 | 44.44 |
| Os07t0676600-01 | Rice | cytosol | 42.86 | 43.95 |
| Os03t0338400-01 | Rice | nucleus | 42.24 | 41.72 |
Protein Annotations
| EnsemblPlants:Os11t0111800-00 | EnsemblPlantsGene:Os11g0111800 | EntrezGene:4349582 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF43 | ProteinID:ABG22337.1 |
| ProteinID:BAT12373.1 | ProteinID:EAZ17180.1 | RefSeq:XP_015615871.1 | SEG:seg | UniParc:UPI0000D8997F | UniProt:A3C7W7 |
| MapMan:35.2 | : | : | : | : | : |
Description
basic helix-loop-helix protein 160, SKIP interacting protein 19, SKIPa-interacting protein 19, SKIPa-interacting protein 19Conserved hypothetical protein. (Os11t0111800-00)
Coordinates
chr11:+:552576..558648
Molecular Weight (calculated)
17455.7 Da
IEP (calculated)
4.385
GRAVY (calculated)
-0.302
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKDQKKAT TALEEKLELL RDVTKSSAAN ETSILVDASK YIKELKDKVS QEPEQLGSTS SSMPMPRVSV SSVELEKKIG FRINVSMEKS QPELLTSVLE
101: AFEELGLDVL DADVSCADDT AFRLEALGSS QSEAAETSVD EQMVRHAVLQ AIKKCIDGSS I
101: AFEELGLDVL DADVSCADDT AFRLEALGSS QSEAAETSVD EQMVRHAVLQ AIKKCIDGSS I
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
Arabidopsis Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.