Factsheet for Os05t0337200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0676600-01	Rice	cytosol	56.86	55.41
Zm00001d000400_P001	Maize	nucleus	60.13	54.76
KRH14875	Soybean	cytosol	55.56	54.49
KRH73223	Soybean	cytosol	55.56	54.49
GSMUA_Achr10P...	Banana	cytosol	52.94	52.6
VIT_13s0067g02280.t01	Wine grape	cytosol	53.59	51.57
KRH76078	Soybean	mitochondrion	50.33	51.33
KRH65496	Soybean	mitochondrion	49.67	50.67
KRH00396	Soybean	nucleus	50.33	50.66
KRH40793	Soybean	cytosol	50.33	50.66
KRH31215	Soybean	cytosol	51.63	50.32
VIT_08s0058g00960.t01	Wine grape	mitochondrion	50.98	50.0
OQU77760	Sorghum	mitochondrion	66.01	49.75
Os03t0338400-01	Rice	nucleus	52.94	49.69
KRG97660	Soybean	cytosol	50.98	49.68
AT2G40435.1	Thale cress	mitochondrion, nucleus	49.02	47.47
VIT_06s0004g07700.t01	Wine grape	mitochondrion	49.02	46.88
Solyc06g050840.2.1	Tomato	cytosol	47.06	45.28
PGSC0003DMT400071914	Potato	cytosol	47.06	45.0
CDX79988	Canola	nucleus	44.44	43.04
Bra004568.1-P	Field mustard	nucleus	44.44	43.04
AT3G56220.1	Thale cress	nucleus	43.79	42.95
CDY23908	Canola	nucleus	44.44	42.77
Bra003232.1-P	Field mustard	cytosol	43.79	42.68
CDX67638	Canola	cytosol	43.79	42.68
CDY32003	Canola	cytosol	43.79	42.68
CDY71264	Canola	cytosol	43.79	42.68
CDY45386	Canola	cytosol	44.44	42.5
Os11t0111800-00	Rice	cytosol, nucleus, plastid	44.44	42.24
CDX76055	Canola	cytosol	42.48	41.94
KRH17139	Soybean	mitochondrion	43.14	41.51
Bra007228.1-P	Field mustard	cytosol	41.83	40.76
CDY27232	Canola	cytosol	41.83	40.76
CDX72157	Canola	cytosol	41.83	40.76
CDY06993	Canola	nucleus	32.03	40.5
KRH72775	Soybean	mitochondrion	41.18	39.87
CDY52931	Canola	cytosol, mitochondrion	36.6	39.72
Os12t0111400-01	Rice	cytosol, nucleus, plastid	24.84	39.58
Bra014704.1-P	Field mustard	cytosol	39.87	37.89
CDY43345	Canola	cytosol	33.33	36.96
KRH30146	Soybean	mitochondrion	37.91	36.48
Bra017003.1-P	Field mustard	cytosol	30.07	36.22
Solyc09g018500.1.1	Tomato	cytosol	39.87	34.46
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	39.22	34.09
CDX93181	Canola	cytosol	20.91	33.33
Bra016997.1-P	Field mustard	cytosol	23.53	33.33
KRG98184	Soybean	extracellular, plastid	32.03	28.32

Protein Annotations

MapMan:15.5.32	EntrezGene:4338459	ProteinID:AAV32179.1	EMBL:AK063202	ProteinID:BAF17151.1	ProteinID:BAS93457.1
ncoils:Coil	ProteinID:EEE63301.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638
EnsemblPlantsGene:Os05g0337200	EnsemblPlants:Os05t0337200-01	PANTHER:PTHR31945	PANTHER:PTHR31945:SF24	UniProt:Q5WMQ1	SUPFAM:SSF47459
UniParc:UPI0000450914	RefSeq:XP_015638799.1	:	:	:	:

Description

basic helix-loop-helix protein 162Helix-loop-helix DNA-binding domain containing protein. (Os05t0337200-01)

Coordinates

chr5:-:15753065..15754783

Molecular Weight (calculated)

16608.1 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.090

Length

153 amino acids

Sequence
(BLAST)

001: MVSREQKRAS LHEKLQILRT LTHSHAVNKM SIISDASTYI KDLKQKIAAL NKELGCAKNM NICEEPSPVV RVQVLDKGFL INVFMDKSSP GLLSSILQAF
101: DELGLTVIEA RASCSNSFRL EAVGGEHEEA DGGIDANAVE LAVMQAIKST PGK

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.