Factsheet for Bra014704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76055	Canola	cytosol	88.2	91.61
Bra003232.1-P	Field mustard	cytosol	68.94	70.7
Bra007228.1-P	Field mustard	cytosol	68.94	70.7
AT3G56220.1	Thale cress	nucleus	66.46	68.59
Bra004568.1-P	Field mustard	nucleus	57.76	58.86
Bra017003.1-P	Field mustard	cytosol	42.86	54.33
Bra016997.1-P	Field mustard	cytosol	36.02	53.7
KRH31215	Soybean	cytosol	48.45	49.68
KRG97660	Soybean	cytosol	48.45	49.68
KRH73223	Soybean	cytosol	47.83	49.36
KRH14875	Soybean	cytosol	47.2	48.72
VIT_13s0067g02280.t01	Wine grape	cytosol	45.96	46.54
Solyc06g050840.2.1	Tomato	cytosol	45.96	46.54
PGSC0003DMT400071914	Potato	cytosol	45.34	45.62
Os07t0676600-01	Rice	cytosol	41.61	42.68
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	42.24	42.5
EER92303	Sorghum	mitochondrion	42.86	42.07
Zm00001d029078_P002	Maize	mitochondrion	42.86	42.07
TraesCS4A01G136800.2	Wheat	mitochondrion	41.61	41.88
Os03t0338400-01	Rice	nucleus	42.24	41.72
HORVU4Hr1G049550.2	Barley	mitochondrion	40.37	40.88
TraesCS4B01G167700.1	Wheat	mitochondrion	40.37	40.88
Os05t0337200-01	Rice	cytosol, mitochondrion	37.89	39.87
Zm00001d047512_P002	Maize	cytosol, mitochondrion	41.61	39.65
KXG36938	Sorghum	cytosol	41.61	39.18
TraesCS2D01G108900.1	Wheat	mitochondrion	37.89	39.1
TraesCS2B01G126400.1	Wheat	mitochondrion	37.89	38.85
TraesCS2A01G108800.1	Wheat	mitochondrion	34.16	33.95
Zm00001d000400_P001	Maize	nucleus	34.78	33.33
OQU77760	Sorghum	mitochondrion	38.51	30.54
HORVU2Hr1G018600.1	Barley	mitochondrion	37.89	27.98

Protein Annotations

EnsemblPlants:Bra014704.1	EnsemblPlants:Bra014704.1-P	EnsemblPlantsGene:Bra014704	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8
SEG:seg	UniParc:UPI000254493E	UniProt:M4DDY5	MapMan:35.2	:	:

Description

AT3G56220 (E=1e-051) | transcription regulator

Coordinates

chrA04:-:2365189..2366339

Molecular Weight (calculated)

17852.8 Da

IEP (calculated)

4.574

GRAVY (calculated)

-0.474

Length

161 amino acids

Sequence
(BLAST)

001: MVSRNKSDSS MRDKFQLLRS VTNSHAESET SIIADASKYI KNLKKKVEEI NNVTTSEQYF CDPTDPMVTV ETLENEFLIN ITSRKNDGGM LVCLLEAFED
101: LGLDVVEARV SCTDSFSMHA VGSSNNDDGE SMDAEAVKHA VEVAVRTCSD GHDHYKKTAT Y

Best Arabidopsis Sequence Match ( AT3G56220.1 )
(BLAST)

001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA

Arabidopsis Description

At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.