Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27232 | Canola | cytosol | 100.0 | 100.0 |
| Bra003232.1-P | Field mustard | cytosol | 89.17 | 89.17 |
| AT3G56220.1 | Thale cress | nucleus | 78.34 | 78.85 |
| Bra014704.1-P | Field mustard | cytosol | 70.7 | 68.94 |
| Bra004568.1-P | Field mustard | nucleus | 66.24 | 65.82 |
| Bra017003.1-P | Field mustard | cytosol | 47.77 | 59.06 |
| Bra016997.1-P | Field mustard | cytosol | 39.49 | 57.41 |
| KRH73223 | Soybean | cytosol | 55.41 | 55.77 |
| KRH14875 | Soybean | cytosol | 54.78 | 55.13 |
| KRG97660 | Soybean | cytosol | 54.78 | 54.78 |
| KRH31215 | Soybean | cytosol | 54.14 | 54.14 |
| VIT_13s0067g02280.t01 | Wine grape | cytosol | 52.87 | 52.2 |
| Solyc06g050840.2.1 | Tomato | cytosol | 52.23 | 51.57 |
| PGSC0003DMT400071914 | Potato | cytosol | 50.96 | 50.0 |
| Os07t0676600-01 | Rice | cytosol | 47.13 | 47.13 |
| EER92303 | Sorghum | mitochondrion | 48.41 | 46.34 |
| Os03t0338400-01 | Rice | nucleus | 47.77 | 46.01 |
| TraesCS4A01G136800.2 | Wheat | mitochondrion | 46.5 | 45.62 |
| TraesCS4B01G167700.1 | Wheat | mitochondrion | 45.86 | 45.28 |
| Zm00001d029078_P002 | Maize | mitochondrion | 47.13 | 45.12 |
| TraesCS4D01G170400.1 | Wheat | cytosol, mitochondrion | 45.86 | 45.0 |
| HORVU4Hr1G049550.2 | Barley | mitochondrion | 44.59 | 44.03 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 47.13 | 43.79 |
| TraesCS2D01G108900.1 | Wheat | mitochondrion | 42.04 | 42.31 |
| TraesCS2B01G126400.1 | Wheat | mitochondrion | 42.04 | 42.04 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 40.76 | 41.83 |
| KXG36938 | Sorghum | cytosol | 45.22 | 41.52 |
| TraesCS2A01G108800.1 | Wheat | mitochondrion | 38.85 | 37.65 |
| Zm00001d000400_P001 | Maize | nucleus | 38.85 | 36.31 |
| OQU77760 | Sorghum | mitochondrion | 40.76 | 31.53 |
| HORVU2Hr1G018600.1 | Barley | mitochondrion | 42.04 | 30.28 |
Protein Annotations
| EnsemblPlants:Bra007228.1 | EnsemblPlants:Bra007228.1-P | EnsemblPlantsGene:Bra007228 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR036638 | ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF8 |
| SUPFAM:SSF47459 | UniParc:UPI0002542B25 | UniProt:M4CSN6 | MapMan:35.2 | : | : |
Description
AT3G56220 (E=6e-062) | transcription regulator
Coordinates
chrA09:+:28101051..28102282
Molecular Weight (calculated)
17561.8 Da
IEP (calculated)
4.597
GRAVY (calculated)
-0.410
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKEYKRDS SLREKFQLLR SITNSHAESE TSIIEDASKY IKKLKHKVEK INNETTSEQY FCDPTDPMVT VETLEKGFMI KVMSSKNEPG MLVCVLEVFE
101: DLGLEVVEAR VSCKDSFSLH AIGISNNDDC ESMDGEVVKQ AVAVAVSTWS DSQDPKG
101: DLGLEVVEAR VSCKDSFSLH AIGISNNDDC ESMDGEVVKQ AVAVAVSTWS DSQDPKG
001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA
Arabidopsis Description
At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.