Factsheet for Solyc06g050840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071914	Potato	cytosol	97.48	96.88
VIT_13s0067g02280.t01	Wine grape	cytosol	63.52	63.52
KRH31215	Soybean	cytosol	60.38	61.15
KRH73223	Soybean	cytosol	59.75	60.9
KRH14875	Soybean	cytosol	59.12	60.26
KRG97660	Soybean	cytosol	59.12	59.87
AT2G40435.1	Thale cress	mitochondrion, nucleus	54.72	55.06
AT3G56220.1	Thale cress	nucleus	52.83	53.85
CDY06993	Canola	nucleus	40.25	52.89
Os07t0676600-01	Rice	cytosol	52.2	52.87
Bra007228.1-P	Field mustard	cytosol	51.57	52.23
CDY27232	Canola	cytosol	51.57	52.23
Bra004568.1-P	Field mustard	nucleus	51.57	51.9
CDX79988	Canola	nucleus	51.57	51.9
CDY45386	Canola	cytosol	52.2	51.88
CDY52931	Canola	cytosol, mitochondrion	45.91	51.77
CDY32003	Canola	cytosol	50.31	50.96
Bra003232.1-P	Field mustard	cytosol	50.31	50.96
CDY71264	Canola	cytosol	50.31	50.96
CDX72157	Canola	cytosol	50.31	50.96
CDX67638	Canola	cytosol	50.31	50.96
Os03t0338400-01	Rice	nucleus	52.2	50.92
CDY23908	Canola	nucleus	49.69	49.69
TraesCS4B01G167700.1	Wheat	mitochondrion	49.69	49.69
EER92303	Sorghum	mitochondrion	50.94	49.39
TraesCS4A01G136800.2	Wheat	mitochondrion	49.69	49.38
HORVU4Hr1G049550.2	Barley	mitochondrion	49.06	49.06
Bra017003.1-P	Field mustard	cytosol	38.99	48.82
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	49.06	48.75
TraesCS2B01G126400.1	Wheat	mitochondrion	47.17	47.77
Os05t0337200-01	Rice	cytosol, mitochondrion	45.28	47.06
TraesCS2D01G108900.1	Wheat	mitochondrion	45.91	46.79
CDX76055	Canola	cytosol	45.28	46.45
Zm00001d029078_P002	Maize	mitochondrion	47.8	46.34
Bra016997.1-P	Field mustard	cytosol	31.45	46.3
Bra014704.1-P	Field mustard	cytosol	46.54	45.96
Zm00001d047512_P002	Maize	cytosol, mitochondrion	48.43	45.56
CDY43345	Canola	cytosol	38.99	44.93
KXG36938	Sorghum	cytosol	47.8	44.44
TraesCS2A01G108800.1	Wheat	mitochondrion	42.77	41.98
CDX93181	Canola	cytosol	24.53	40.62
Zm00001d000400_P001	Maize	nucleus	42.77	40.48
Solyc09g018500.1.1	Tomato	cytosol	41.51	37.29
OQU77760	Sorghum	mitochondrion	45.91	35.96
HORVU2Hr1G018600.1	Barley	mitochondrion	45.91	33.49

Protein Annotations

EnsemblPlants:Solyc06g050840.2.1	EnsemblPlantsGene:Solyc06g050840.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF43
SEG:seg	SUPFAM:SSF47459	UniParc:UPI0002766CF5	UniProt:K4C5M8	MapMan:35.2	:

Description

No Description!

Coordinates

chr6:+:33674249..33675845

Molecular Weight (calculated)

17853.1 Da

IEP (calculated)

4.733

GRAVY (calculated)

-0.368

Length

159 amino acids

Sequence
(BLAST)

001: MVSREQKRAS VLHDKLQLLR SITKSHALSE SSIIVDASKY IQELKHKVER LNQDITTTTP QTNSNNNTSS WPQIEVETLE KGFLVNVYSE RSCPGLLVSI
101: LQVLEDLGLN VLEARVSCTD TFRLQAFGGE DEETMINAQV VTEAVFEAIK NWSESKEQG

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.