Factsheet for HORVU4Hr1G049550.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G167700.1	Wheat	mitochondrion	94.34	94.34
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	86.16	85.62
TraesCS4A01G136800.2	Wheat	mitochondrion	86.16	85.62
EER92303	Sorghum	mitochondrion	75.47	73.17
Zm00001d029078_P002	Maize	mitochondrion	74.84	72.56
Os03t0338400-01	Rice	nucleus	74.21	72.39
Zm00001d047512_P002	Maize	cytosol, mitochondrion	73.58	69.23
GSMUA_Achr10P...	Banana	cytosol	55.35	57.14
KRH73223	Soybean	cytosol	54.09	55.13
KRH14875	Soybean	cytosol	53.46	54.49
VIT_08s0058g00960.t01	Wine grape	mitochondrion	52.83	53.85
VIT_13s0067g02280.t01	Wine grape	cytosol	52.83	52.83
VIT_06s0004g07700.t01	Wine grape	mitochondrion	52.83	52.5
KRH31215	Soybean	cytosol	51.57	52.23
KRH65496	Soybean	mitochondrion	49.06	52.0
KRG97660	Soybean	cytosol	50.94	51.59
KRH76078	Soybean	mitochondrion	48.43	51.33
KRH00396	Soybean	nucleus	47.8	50.0
Solyc06g050840.2.1	Tomato	cytosol	49.06	49.06
KRH40793	Soybean	cytosol	46.54	48.68
PGSC0003DMT400071914	Potato	cytosol	48.43	48.12
HORVU2Hr1G018600.1	Barley	mitochondrion	64.15	46.79
AT2G40435.1	Thale cress	mitochondrion, nucleus	45.91	46.2
AT3G56220.1	Thale cress	nucleus	44.03	44.87
Bra007228.1-P	Field mustard	cytosol	44.03	44.59
CDY27232	Canola	cytosol	44.03	44.59
CDX67638	Canola	cytosol	44.03	44.59
CDY71264	Canola	cytosol	44.03	44.59
Bra003232.1-P	Field mustard	cytosol	44.03	44.59
CDY32003	Canola	cytosol	44.03	44.59
CDY23908	Canola	nucleus	43.4	43.4
KRH17139	Soybean	mitochondrion	43.4	43.4
CDX72157	Canola	cytosol	42.77	43.31
Bra004568.1-P	Field mustard	nucleus	42.77	43.04
CDX79988	Canola	nucleus	42.77	43.04
CDY06993	Canola	nucleus	32.7	42.98
CDY52931	Canola	cytosol, mitochondrion	37.74	42.55
CDY45386	Canola	cytosol	42.14	41.88
KRH72775	Soybean	mitochondrion	41.51	41.77
CDX76055	Canola	cytosol	40.25	41.29
Bra014704.1-P	Field mustard	cytosol	40.88	40.37
CDY43345	Canola	cytosol	34.59	39.86
KRH30146	Soybean	mitochondrion	39.62	39.62
Bra017003.1-P	Field mustard	cytosol	30.82	38.58
Bra016997.1-P	Field mustard	cytosol	25.16	37.04
Solyc09g018500.1.1	Tomato	cytosol	38.99	35.03
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	38.36	34.66
CDX93181	Canola	cytosol	18.87	31.25
KRG98184	Soybean	extracellular, plastid	33.33	30.64

Protein Annotations

EMBL:AK355249	EnsemblPlants:HORVU4Hr1G049550.2	EnsemblPlantsGene:HORVU4Hr1G049550	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF43
SEG:seg	SUPFAM:SSF47459	UniParc:UPI0002004F35	UniProt:F2CUE7	MapMan:35.2	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CUE7]

Coordinates

chrchr4H:-:401575053..401576805

Molecular Weight (calculated)

17176.6 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.084

Length

159 amino acids

Sequence
(BLAST)

001: MMSRERKKTA ALQDKLQLLR SLAHSHALSN TSIIMDASKY IKELKQNVVM LNQEIACAAQ DSRSRQSSYP TVNVETLGHG SFLVNVLSDK SCPGLLVSIL
101: EAFDELGLSV LQATATCADT FRLEAIGGEN LVENVDEHVV KQAVLRACSS LSGGGNKQT

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.