Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004568.1-P | Field mustard | nucleus | 83.54 | 83.54 |
| CDX79988 | Canola | nucleus | 83.54 | 83.54 |
| CDY45386 | Canola | cytosol | 82.91 | 81.88 |
| Bra017003.1-P | Field mustard | cytosol | 64.56 | 80.31 |
| CDY23908 | Canola | nucleus | 75.95 | 75.47 |
| CDY52931 | Canola | cytosol, mitochondrion | 66.46 | 74.47 |
| CDY06993 | Canola | nucleus | 56.33 | 73.55 |
| Bra016997.1-P | Field mustard | cytosol | 50.0 | 73.15 |
| AT3G56220.1 | Thale cress | nucleus | 67.72 | 68.59 |
| CDX93181 | Canola | cytosol | 39.87 | 65.62 |
| KRH31215 | Soybean | cytosol | 60.13 | 60.51 |
| KRH73223 | Soybean | cytosol | 58.86 | 59.62 |
| KRG97660 | Soybean | cytosol | 58.86 | 59.24 |
| KRH14875 | Soybean | cytosol | 57.59 | 58.33 |
| VIT_13s0067g02280.t01 | Wine grape | cytosol | 56.96 | 56.6 |
| Solyc06g050840.2.1 | Tomato | cytosol | 55.06 | 54.72 |
| PGSC0003DMT400071914 | Potato | cytosol | 54.43 | 53.75 |
| Os03t0338400-01 | Rice | nucleus | 53.16 | 51.53 |
| EER92303 | Sorghum | mitochondrion | 51.9 | 50.0 |
| Os07t0676600-01 | Rice | cytosol | 49.37 | 49.68 |
| Zm00001d029078_P002 | Maize | mitochondrion | 51.27 | 49.39 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 47.47 | 49.02 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 51.9 | 48.52 |
| TraesCS4D01G170400.1 | Wheat | cytosol, mitochondrion | 48.1 | 47.5 |
| TraesCS4A01G136800.2 | Wheat | mitochondrion | 47.47 | 46.88 |
| TraesCS2D01G108900.1 | Wheat | mitochondrion | 46.2 | 46.79 |
| TraesCS4B01G167700.1 | Wheat | mitochondrion | 46.84 | 46.54 |
| TraesCS2B01G126400.1 | Wheat | mitochondrion | 46.2 | 46.5 |
| HORVU4Hr1G049550.2 | Barley | mitochondrion | 46.2 | 45.91 |
| KXG36938 | Sorghum | cytosol | 48.1 | 44.44 |
| TraesCS2A01G108800.1 | Wheat | mitochondrion | 43.04 | 41.98 |
| Zm00001d000400_P001 | Maize | nucleus | 43.04 | 40.48 |
| OQU77760 | Sorghum | mitochondrion | 46.2 | 35.96 |
| HORVU2Hr1G018600.1 | Barley | mitochondrion | 46.2 | 33.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818637 | UniProt:A0A178VRF4 | ProteinID:AAM14815.1 | ProteinID:AAM15349.1 | ProteinID:AEC09830.1 |
| EMBL:AK220685 | ArrayExpress:AT2G40435 | EnsemblPlantsGene:AT2G40435 | RefSeq:AT2G40435 | TAIR:AT2G40435 | RefSeq:AT2G40435-TAIR-G |
| EnsemblPlants:AT2G40435.1 | TAIR:AT2G40435.1 | EMBL:AY227635 | EMBL:AY649272 | Unigene:At.37051 | ncoils:Coil |
| RefSeq:NP_565932.1 | ProteinID:OAP08939.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF8 | UniProt:Q8RUZ5 | UniParc:UPI00000AA24B | : | : |
Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
Coordinates
chr2:+:16886767..16888638
Molecular Weight (calculated)
17569.6 Da
IEP (calculated)
4.382
GRAVY (calculated)
-0.598
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.