CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017003.1-P	Field mustard	cytosol	78.75	99.21
CDY52931	Canola	cytosol, mitochondrion	76.88	87.23
CDY06993	Canola	nucleus	64.38	85.12
AT2G40435.1	Thale cress	mitochondrion, nucleus	81.88	82.91
CDX93181	Canola	cytosol	48.75	81.25
CDX79988	Canola	nucleus	78.12	79.11
CDY23908	Canola	nucleus	70.0	70.44
CDX72157	Canola	cytosol	62.5	63.69
CDY27232	Canola	cytosol	62.5	63.69
CDX67638	Canola	cytosol	61.88	63.06
CDY32003	Canola	cytosol	61.88	63.06
CDY71264	Canola	cytosol	61.88	63.06
CDX76055	Canola	cytosol	55.62	57.42
KRG97660	Soybean	cytosol	56.25	57.32
KRH31215	Soybean	cytosol	55.0	56.05
CDY43345	Canola	cytosol	48.12	55.8
KRH73223	Soybean	cytosol	54.38	55.77
KRH14875	Soybean	cytosol	53.12	54.49
VIT_13s0067g02280.t01	Wine grape	cytosol	53.75	54.09
Solyc06g050840.2.1	Tomato	cytosol	51.88	52.2
PGSC0003DMT400071914	Potato	cytosol	51.88	51.88
Os03t0338400-01	Rice	nucleus	46.88	46.01
EER92303	Sorghum	mitochondrion	46.25	45.12
Os07t0676600-01	Rice	cytosol	43.75	44.59
Zm00001d029078_P002	Maize	mitochondrion	45.62	44.51
Os05t0337200-01	Rice	cytosol, mitochondrion	42.5	44.44
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	44.38	44.38
Zm00001d047512_P002	Maize	cytosol, mitochondrion	46.25	43.79
TraesCS4A01G136800.2	Wheat	mitochondrion	43.75	43.75
TraesCS4B01G167700.1	Wheat	mitochondrion	43.12	43.4
TraesCS2D01G108900.1	Wheat	mitochondrion	41.25	42.31
HORVU4Hr1G049550.2	Barley	mitochondrion	41.88	42.14
TraesCS2B01G126400.1	Wheat	mitochondrion	41.25	42.04
KXG36938	Sorghum	cytosol	43.75	40.94
Zm00001d000400_P001	Maize	nucleus	42.5	40.48
TraesCS2A01G108800.1	Wheat	mitochondrion	38.12	37.65
OQU77760	Sorghum	mitochondrion	40.62	32.02
HORVU2Hr1G018600.1	Barley	mitochondrion	41.25	30.28

Protein Annotations

EnsemblPlants:CDY45386	EnsemblPlantsGene:GSBRNA2T00081887001	GO:A0A078I641	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8
ProteinID:CDY45386	ProteinID:CDY45386.1	SUPFAM:SSF55021	UniParc:UPI0004EF3725	UniProt:A0A078I641	MapMan:35.2

Description

BnaC06g42410DBnaC06g42410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I641]

Coordinates

chrLK032623:-:126183..127425

Molecular Weight (calculated)

17823.0 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.521

Length

160 amino acids

Sequence
(BLAST)

001: MVSREQNRGS LQEKFQLLRS ATNSHAQNET SIIMDASKYI QNLKKKVERF KEDTAAEQSS SEPTDPTTPM VKVETLEKGF MIKVFSGENQ PGMLVSVLEA
101: FEDMGLDVLE ARVSCTDSFS LHAMGVKQNE DDERMDAEAV KQAVTDAITS WGETNVPPFL

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.