CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003232.1-P	Field mustard	cytosol	100.0	100.0
CDX67638	Canola	cytosol	100.0	100.0
CDY71264	Canola	cytosol	100.0	100.0
CDY27232	Canola	cytosol	89.17	89.17
CDX72157	Canola	cytosol	84.71	84.71
AT3G56220.1	Thale cress	nucleus	80.89	81.41
CDY43345	Canola	cytosol	61.15	69.57
CDX76055	Canola	cytosol	66.88	67.74
CDX79988	Canola	nucleus	65.61	65.19
CDY45386	Canola	cytosol	63.06	61.88
CDY23908	Canola	nucleus	62.42	61.64
CDY52931	Canola	cytosol, mitochondrion	54.14	60.28
CDY06993	Canola	nucleus	45.22	58.68
KRH73223	Soybean	cytosol	56.05	56.41
KRH14875	Soybean	cytosol	55.41	55.77
KRG97660	Soybean	cytosol	54.78	54.78
KRH31215	Soybean	cytosol	54.14	54.14
VIT_13s0067g02280.t01	Wine grape	cytosol	54.14	53.46
Solyc06g050840.2.1	Tomato	cytosol	50.96	50.31
PGSC0003DMT400071914	Potato	cytosol	50.96	50.0
Os03t0338400-01	Rice	nucleus	50.32	48.47
CDX93181	Canola	cytosol	29.3	47.92
Os07t0676600-01	Rice	cytosol	47.77	47.77
EER92303	Sorghum	mitochondrion	48.41	46.34
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	46.5	45.62
TraesCS4A01G136800.2	Wheat	mitochondrion	46.5	45.62
TraesCS4B01G167700.1	Wheat	mitochondrion	45.86	45.28
Zm00001d029078_P002	Maize	mitochondrion	47.13	45.12
HORVU4Hr1G049550.2	Barley	mitochondrion	44.59	44.03
Os05t0337200-01	Rice	cytosol, mitochondrion	42.68	43.79
Zm00001d047512_P002	Maize	cytosol, mitochondrion	47.13	43.79
TraesCS2D01G108900.1	Wheat	mitochondrion	42.68	42.95
KXG36938	Sorghum	cytosol	46.5	42.69
TraesCS2B01G126400.1	Wheat	mitochondrion	42.68	42.68
TraesCS2A01G108800.1	Wheat	mitochondrion	39.49	38.27
Zm00001d000400_P001	Maize	nucleus	40.76	38.1
OQU77760	Sorghum	mitochondrion	42.68	33.0
HORVU2Hr1G018600.1	Barley	mitochondrion	42.68	30.73

Protein Annotations

EnsemblPlants:CDY32003	EnsemblPlantsGene:GSBRNA2T00050820001	GO:A0A078H569	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8
ProteinID:CDY32003	ProteinID:CDY32003.1	ProteinID:CDY71264.1	SUPFAM:SSF47459	UniParc:UPI00025414C5	UniProt:A0A078H569
MapMan:35.2	:	:	:	:	:

Description

BnaC06g15810DBnaA07g16780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H569]

Coordinates

chrLK032284:+:50176..52153

Molecular Weight (calculated)

17464.7 Da

IEP (calculated)

4.911

GRAVY (calculated)

-0.389

Length

157 amino acids

Sequence
(BLAST)

001: MVSREYKRDS SLREKFQLLR SITNSNAESE TSIIVDASKY IKKLKQKVEK INNETTSEKY FCDPTGHMVT VETLEKGFMI KVMSGKNEAG LLVCVLEAFE
101: DLGLEVVEAR VSCMDSFSLH AIGSSNNDDC ESMDGESVKQ AVAVAIRTWS DSHDPKG

Best Arabidopsis Sequence Match ( AT3G56220.1 )
(BLAST)

001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA

Arabidopsis Description

At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.