CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52931	Canola	cytosol, mitochondrion	96.69	82.98
Bra016997.1-P	Field mustard	cytosol	61.98	69.44
CDY45386	Canola	cytosol	85.12	64.38
AT2G40435.1	Thale cress	mitochondrion, nucleus	73.55	56.33
CDX79988	Canola	nucleus	70.25	53.8
CDY23908	Canola	nucleus	63.64	48.43
CDY27232	Canola	cytosol	59.5	45.86
CDX67638	Canola	cytosol	58.68	45.22
CDY32003	Canola	cytosol	58.68	45.22
CDY71264	Canola	cytosol	58.68	45.22
CDX72157	Canola	cytosol	57.85	44.59
CDX76055	Canola	cytosol	57.02	44.52
KRH31215	Soybean	cytosol	54.55	42.04
KRG97660	Soybean	cytosol	54.55	42.04
KRH73223	Soybean	cytosol	52.07	40.38
Solyc06g050840.2.1	Tomato	cytosol	52.89	40.25
PGSC0003DMT400071914	Potato	cytosol	52.89	40.0
KRH14875	Soybean	cytosol	51.24	39.74
VIT_13s0067g02280.t01	Wine grape	cytosol	52.07	39.62
CDY43345	Canola	cytosol	44.63	39.13
Os07t0676600-01	Rice	cytosol	46.28	35.67
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	47.11	35.62
TraesCS4A01G136800.2	Wheat	mitochondrion	47.11	35.62
EER92303	Sorghum	mitochondrion	47.93	35.37
Os03t0338400-01	Rice	nucleus	47.11	34.97
TraesCS4B01G167700.1	Wheat	mitochondrion	45.45	34.59
Zm00001d029078_P002	Maize	mitochondrion	46.28	34.15
TraesCS2D01G108900.1	Wheat	mitochondrion	43.8	33.97
TraesCS2B01G126400.1	Wheat	mitochondrion	43.8	33.76
Zm00001d047512_P002	Maize	cytosol, mitochondrion	46.28	33.14
HORVU4Hr1G049550.2	Barley	mitochondrion	42.98	32.7
Os05t0337200-01	Rice	cytosol, mitochondrion	40.5	32.03
KXG36938	Sorghum	cytosol	44.63	31.58
TraesCS2A01G108800.1	Wheat	mitochondrion	42.15	31.48
CDX93181	Canola	cytosol	24.79	31.25
Zm00001d000400_P001	Maize	nucleus	39.67	28.57
OQU77760	Sorghum	mitochondrion	41.32	24.63
HORVU2Hr1G018600.1	Barley	mitochondrion	43.8	24.31

Protein Annotations

EnsemblPlants:CDY06993	EnsemblPlantsGene:GSBRNA2T00123301001	GO:A0A078F5Q9	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8
ProteinID:CDY06993	ProteinID:CDY06993.1	UniParc:UPI0004EE1E28	MapMan:35.2	:	:

Description

BnaA04g23220D

Coordinates

chrLK031974:-:529059..530005

Molecular Weight (calculated)

13663.1 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.583

Length

121 amino acids

Sequence
(BLAST)

001: MVSREQNRGS LQEKFQLLRS ATNSHAQSET SIIMDASKYI QNLKKKVERF KEDTAAEQSS SEPTDPTTPM VKVETLEKEA FEDMGLDVLE ARVSCTDSFS
101: LHAMGVKCLY DLLNTNELTL R

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.