Factsheet for VIT_13s0067g02280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73223	Soybean	cytosol	72.33	73.72
VIT_08s0058g00960.t01	Wine grape	mitochondrion	71.07	72.44
KRH14875	Soybean	cytosol	70.44	71.79
KRH31215	Soybean	cytosol	70.44	71.34
KRG97660	Soybean	cytosol	67.92	68.79
Solyc06g050840.2.1	Tomato	cytosol	63.52	63.52
PGSC0003DMT400071914	Potato	cytosol	63.52	63.12
VIT_06s0004g07700.t01	Wine grape	mitochondrion	62.89	62.5
Os07t0676600-01	Rice	cytosol	60.38	61.15
AT2G40435.1	Thale cress	mitochondrion, nucleus	56.6	56.96
EER92303	Sorghum	mitochondrion	58.49	56.71
CDY23908	Canola	nucleus	56.6	56.6
Os03t0338400-01	Rice	nucleus	57.86	56.44
Bra004568.1-P	Field mustard	nucleus	55.97	56.33
CDX79988	Canola	nucleus	55.97	56.33
AT3G56220.1	Thale cress	nucleus	54.72	55.77
Zm00001d029078_P002	Maize	mitochondrion	55.97	54.27
CDY32003	Canola	cytosol	53.46	54.14
CDY71264	Canola	cytosol	53.46	54.14
CDX67638	Canola	cytosol	53.46	54.14
Bra003232.1-P	Field mustard	cytosol	53.46	54.14
CDY45386	Canola	cytosol	54.09	53.75
TraesCS4A01G136800.2	Wheat	mitochondrion	54.09	53.75
Os05t0337200-01	Rice	cytosol, mitochondrion	51.57	53.59
TraesCS2B01G126400.1	Wheat	mitochondrion	52.83	53.5
TraesCS4B01G167700.1	Wheat	mitochondrion	53.46	53.46
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	53.46	53.12
CDY27232	Canola	cytosol	52.2	52.87
Bra007228.1-P	Field mustard	cytosol	52.2	52.87
HORVU4Hr1G049550.2	Barley	mitochondrion	52.83	52.83
TraesCS2D01G108900.1	Wheat	mitochondrion	51.57	52.56
CDY52931	Canola	cytosol, mitochondrion	46.54	52.48
CDX72157	Canola	cytosol	51.57	52.23
Zm00001d047512_P002	Maize	cytosol, mitochondrion	55.35	52.07
CDY06993	Canola	nucleus	39.62	52.07
KXG36938	Sorghum	cytosol	53.46	49.71
CDX76055	Canola	cytosol	47.17	48.39
Bra017003.1-P	Field mustard	cytosol	38.36	48.03
TraesCS2A01G108800.1	Wheat	mitochondrion	47.17	46.3
Bra014704.1-P	Field mustard	cytosol	46.54	45.96
Zm00001d000400_P001	Maize	nucleus	48.43	45.83
Bra016997.1-P	Field mustard	cytosol	30.82	45.37
CDY43345	Canola	cytosol	38.99	44.93
CDX93181	Canola	cytosol	25.16	41.67
OQU77760	Sorghum	mitochondrion	50.94	39.9
HORVU2Hr1G018600.1	Barley	mitochondrion	51.57	37.61

Protein Annotations

EntrezGene:100245026	wikigene:100245026	MapMan:35.2	InterPro:ACT_dom	ProteinID:CBI25398	ProteinID:CBI25398.3
ncoils:Coil	UniProt:D7T4G6	EMBL:FN595514	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR036638	EntrezGene:LOC100245026	wikigene:LOC100245026
PFscan:PS51671	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	SUPFAM:SSF47459	TIGR:TC70439	UniParc:UPI000198467E
ArrayExpress:VIT_13s0067g02280	EnsemblPlantsGene:VIT_13s0067g02280	EnsemblPlants:VIT_13s0067g02280.t01	unigene:Vvi.8595	RefSeq:XP_002278871	RefSeq:XP_002278871.2
RefSeq:XP_010658202.1	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1277499..1278833

Molecular Weight (calculated)

17620.9 Da

IEP (calculated)

4.856

GRAVY (calculated)

-0.210

Length

159 amino acids

Sequence
(BLAST)

001: MVSREHKRPA TPLHEKFQLL RSITNSHALN KTSIIVDASK YIEELKQKVE RLNRNIASTA QNSAAQTLLP VQVTVETLEK GFLVNVFSET SCPGLLVSIL
101: EAFEELGLNV HDASVSCTDR FQLEAVGGED EEQVESIDAQ VVKQAVMQAI KNWSESISQ

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.