Factsheet for VIT_06s0004g07700.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00960.t01	Wine grape	mitochondrion	65.0	66.67
VIT_13s0067g02280.t01	Wine grape	cytosol	62.5	62.89
Os07t0676600-01	Rice	cytosol	54.38	55.41
KRH17139	Soybean	mitochondrion	53.75	54.09
TraesCS4A01G136800.2	Wheat	mitochondrion	53.75	53.75
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	53.12	53.12
TraesCS4B01G167700.1	Wheat	mitochondrion	52.5	52.83
HORVU4Hr1G049550.2	Barley	mitochondrion	52.5	52.83
KRH72775	Soybean	mitochondrion	51.88	52.53
EER92303	Sorghum	mitochondrion	53.75	52.44
Os03t0338400-01	Rice	nucleus	53.12	52.15
Zm00001d029078_P002	Maize	mitochondrion	53.12	51.83
TraesCS2B01G126400.1	Wheat	mitochondrion	50.62	51.59
KRH30146	Soybean	mitochondrion	51.25	51.57
TraesCS2D01G108900.1	Wheat	mitochondrion	50.0	51.28
KXG36938	Sorghum	cytosol	52.5	49.12
Zm00001d047512_P002	Maize	cytosol, mitochondrion	51.88	49.11
Os05t0337200-01	Rice	cytosol, mitochondrion	46.88	49.02
TraesCS2A01G108800.1	Wheat	mitochondrion	45.62	45.06
Zm00001d000400_P001	Maize	nucleus	44.38	42.26
KRG98184	Soybean	extracellular, plastid	42.5	39.31
OQU77760	Sorghum	mitochondrion	46.88	36.95
HORVU2Hr1G018600.1	Barley	mitochondrion	50.0	36.7

Protein Annotations

EntrezGene:100241616	wikigene:100241616	MapMan:35.2	Gene3D:4.10.280.10	ProteinID:CBI15851	ProteinID:CBI15851.3
ncoils:Coil	UniProt:D7SJM5	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	EntrezGene:LOC100241616	wikigene:LOC100241616	PANTHER:PTHR31945
PANTHER:PTHR31945:SF8	SUPFAM:SSF47459	UniParc:UPI000198374F	ArrayExpress:VIT_06s0004g07700	EnsemblPlantsGene:VIT_06s0004g07700	EnsemblPlants:VIT_06s0004g07700.t01
unigene:Vvi.20357	RefSeq:XP_002270440	RefSeq:XP_002270440.2	RefSeq:XP_010650838.1	:	:

Description

No Description!

Coordinates

chr6:+:8496596..8498137

Molecular Weight (calculated)

17935.4 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.318

Length

160 amino acids

Sequence
(BLAST)

001: MISREQKRAA MFKKLELLRS ITNSHAHSKT SILLDASKYI EELKQKVERL NQEVAVAQNS SDEQIPMPVQ VRVEAKEKGY LINVLTESSC PGLLVFILEA
101: FEELGLEVLQ ARVSCSSSFH LEAVGGKENT QGQVEHVDAQ VVKQAVLRAI ENWNESSEQE

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.