CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92303	Sorghum	mitochondrion	71.34	74.39
Os07t0676600-01	Rice	cytosol	67.84	73.89
KRH73223	Soybean	cytosol	54.39	59.62
GSMUA_Achr10P...	Banana	cytosol	52.63	58.44
KRH14875	Soybean	cytosol	53.22	58.33
KRH65496	Soybean	mitochondrion	48.54	55.33
VIT_08s0058g00960.t01	Wine grape	mitochondrion	50.29	55.13
KRH76078	Soybean	mitochondrion	47.95	54.67
KRH40793	Soybean	cytosol	47.95	53.95
KRH31215	Soybean	cytosol	49.12	53.5
VIT_13s0067g02280.t01	Wine grape	cytosol	49.71	53.46
KRG97660	Soybean	cytosol	48.54	52.87
VIT_06s0004g07700.t01	Wine grape	mitochondrion	49.12	52.5
KRH00396	Soybean	nucleus	45.03	50.66
AT2G40435.1	Thale cress	mitochondrion, nucleus	44.44	48.1
Solyc06g050840.2.1	Tomato	cytosol	44.44	47.8
PGSC0003DMT400071914	Potato	cytosol	43.86	46.88
CDY23908	Canola	nucleus	43.27	46.54
Bra003232.1-P	Field mustard	cytosol	42.69	46.5
CDX67638	Canola	cytosol	42.69	46.5
CDY71264	Canola	cytosol	42.69	46.5
CDY32003	Canola	cytosol	42.69	46.5
AT3G56220.1	Thale cress	nucleus	42.11	46.15
Bra007228.1-P	Field mustard	cytosol	41.52	45.22
CDY27232	Canola	cytosol	41.52	45.22
CDX79988	Canola	nucleus	41.52	44.94
Bra004568.1-P	Field mustard	nucleus	41.52	44.94
CDY52931	Canola	cytosol, mitochondrion	36.84	44.68
CDY06993	Canola	nucleus	31.58	44.63
CDX72157	Canola	cytosol	40.94	44.59
CDY45386	Canola	cytosol	40.94	43.75
KRH17139	Soybean	mitochondrion	40.35	43.4
CDX76055	Canola	cytosol	39.18	43.23
CDY43345	Canola	cytosol	34.5	42.75
Bra016997.1-P	Field mustard	cytosol	26.9	42.59
Bra014704.1-P	Field mustard	cytosol	39.18	41.61
KRH30146	Soybean	mitochondrion	38.6	41.51
KRH72775	Soybean	mitochondrion	38.01	41.14
Bra017003.1-P	Field mustard	cytosol	30.41	40.94
OQU77760	Sorghum	mitochondrion	47.95	40.39
KXG27598	Sorghum	cytosol	37.43	36.99
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	38.01	36.93
Solyc09g018500.1.1	Tomato	cytosol	37.43	36.16
KRG98184	Soybean	extracellular, plastid	32.75	32.37
CDX93181	Canola	cytosol	18.13	32.29

Protein Annotations

EnsemblPlants:KXG36938	EnsemblPlantsGene:SORBI_3002G416400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF24	ProteinID:KXG36938
ProteinID:KXG36938.1	SEG:seg	SUPFAM:SSF47459	UniParc:UPI00081AC503	UniProt:A0A1B6QG84	MapMan:15.5.32

Description

hypothetical protein

Coordinates

chr2:+:76362452..76364029

Molecular Weight (calculated)

18507.2 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.103

Length

171 amino acids

Sequence
(BLAST)

001: MMSWEQRKKA AAALHEKLQI LRSITHSRAL SDASIIMDAS EYIKELKQKV VRLKQEMACE EAEAAGALLK HSSSPSPVVT VETLAGAGKH GFLINVLSDK
101: SCPGLLVSIL EAFDELGLSV LQATASCADT FRLEAVGGEN QVDNVDEHVV KQAVLQAMRT CSSQGCRQQQ E

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.