Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79988 | Canola | nucleus | 100.0 | 100.0 |
| AT2G40435.1 | Thale cress | mitochondrion, nucleus | 83.54 | 83.54 |
| Bra017003.1-P | Field mustard | cytosol | 63.29 | 78.74 |
| Bra016997.1-P | Field mustard | cytosol | 49.37 | 72.22 |
| Bra007228.1-P | Field mustard | cytosol | 65.82 | 66.24 |
| Bra003232.1-P | Field mustard | cytosol | 65.19 | 65.61 |
| Bra014704.1-P | Field mustard | cytosol | 58.86 | 57.76 |
| KRH31215 | Soybean | cytosol | 56.96 | 57.32 |
| KRG97660 | Soybean | cytosol | 56.33 | 56.69 |
| KRH73223 | Soybean | cytosol | 55.7 | 56.41 |
| VIT_13s0067g02280.t01 | Wine grape | cytosol | 56.33 | 55.97 |
| KRH14875 | Soybean | cytosol | 54.43 | 55.13 |
| Solyc06g050840.2.1 | Tomato | cytosol | 51.9 | 51.57 |
| PGSC0003DMT400071914 | Potato | cytosol | 51.27 | 50.62 |
| Os07t0676600-01 | Rice | cytosol | 48.73 | 49.04 |
| Os03t0338400-01 | Rice | nucleus | 49.37 | 47.85 |
| EER92303 | Sorghum | mitochondrion | 48.73 | 46.95 |
| Zm00001d029078_P002 | Maize | mitochondrion | 47.47 | 45.73 |
| TraesCS4D01G170400.1 | Wheat | cytosol, mitochondrion | 46.2 | 45.62 |
| TraesCS4A01G136800.2 | Wheat | mitochondrion | 45.57 | 45.0 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 48.1 | 44.97 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 43.04 | 44.44 |
| TraesCS4B01G167700.1 | Wheat | mitochondrion | 44.3 | 44.03 |
| TraesCS2B01G126400.1 | Wheat | mitochondrion | 43.04 | 43.31 |
| TraesCS2D01G108900.1 | Wheat | mitochondrion | 42.41 | 42.95 |
| HORVU4Hr1G049550.2 | Barley | mitochondrion | 43.04 | 42.77 |
| KXG36938 | Sorghum | cytosol | 44.94 | 41.52 |
| TraesCS2A01G108800.1 | Wheat | mitochondrion | 38.61 | 37.65 |
| Zm00001d000400_P001 | Maize | nucleus | 39.24 | 36.9 |
| OQU77760 | Sorghum | mitochondrion | 40.51 | 31.53 |
| HORVU2Hr1G018600.1 | Barley | mitochondrion | 41.77 | 30.28 |
Protein Annotations
Description
AT2G40435 (E=5e-070) | EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT3G56220.1); Has 165 Blast hits to 165 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA05:+:829600..830960
Molecular Weight (calculated)
17293.4 Da
IEP (calculated)
4.644
GRAVY (calculated)
-0.489
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPREKKRGS LKEKFQLLRS ITNSHAENDT SIIMDASKYI KKLKKKVERF KGDTTAGQSS SEPTDPTIPM VTVETLEKGF MINVFAGKNQ PGMLVSVLEA
101: FEDIGLNVLD ARVSCTDSFS LHATGVENED GEGMDSEAVK QAVTDAITSW SESSDLQS
101: FEDIGLNVLD ARVSCTDSFS LHATGVENED GEGMDSEAVK QAVTDAITSW SESSDLQS
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
Arabidopsis Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.