CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000400_P001	Maize	nucleus	55.17	66.67
Os05t0337200-01	Rice	cytosol, mitochondrion	49.75	66.01
KRH73223	Soybean	cytosol	44.34	57.69
KRH14875	Soybean	cytosol	44.34	57.69
KRG97660	Soybean	cytosol	42.86	55.41
KRH31215	Soybean	cytosol	42.36	54.78
EER92303	Sorghum	mitochondrion	42.36	52.44
GSMUA_Achr10P...	Banana	cytosol	39.41	51.95
VIT_13s0067g02280.t01	Wine grape	cytosol	39.9	50.94
VIT_08s0058g00960.t01	Wine grape	mitochondrion	37.93	49.36
KRH40793	Soybean	cytosol	35.96	48.03
KXG36938	Sorghum	cytosol	40.39	47.95
KRH65496	Soybean	mitochondrion	34.98	47.33
VIT_06s0004g07700.t01	Wine grape	mitochondrion	36.95	46.88
KRH00396	Soybean	nucleus	34.98	46.71
KRH76078	Soybean	mitochondrion	34.48	46.67
AT2G40435.1	Thale cress	mitochondrion, nucleus	35.96	46.2
Solyc06g050840.2.1	Tomato	cytosol	35.96	45.91
PGSC0003DMT400071914	Potato	cytosol	35.47	45.0
AT3G56220.1	Thale cress	nucleus	33.0	42.95
CDY71264	Canola	cytosol	33.0	42.68
CDX67638	Canola	cytosol	33.0	42.68
CDY32003	Canola	cytosol	33.0	42.68
Bra003232.1-P	Field mustard	cytosol	33.0	42.68
KRH72775	Soybean	mitochondrion	33.0	42.41
KRH17139	Soybean	mitochondrion	33.0	42.14
CDY23908	Canola	nucleus	33.0	42.14
CDX72157	Canola	cytosol	32.02	41.4
CDY06993	Canola	nucleus	24.63	41.32
Bra007228.1-P	Field mustard	cytosol	31.53	40.76
CDY27232	Canola	cytosol	31.53	40.76
CDY45386	Canola	cytosol	32.02	40.62
Bra004568.1-P	Field mustard	nucleus	31.53	40.51
CDX79988	Canola	nucleus	31.53	40.51
CDX76055	Canola	cytosol	30.54	40.0
CDY52931	Canola	cytosol, mitochondrion	27.59	39.72
KRH30146	Soybean	mitochondrion	30.54	38.99
Bra014704.1-P	Field mustard	cytosol	30.54	38.51
CDY43345	Canola	cytosol	24.14	35.51
Bra017003.1-P	Field mustard	cytosol	22.17	35.43
KXG27598	Sorghum	cytosol	29.56	34.68
Solyc09g018500.1.1	Tomato	cytosol	29.56	33.9
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	29.06	33.52
Bra016997.1-P	Field mustard	cytosol	17.73	33.33
CDX93181	Canola	cytosol	14.78	31.25
KRG98184	Soybean	extracellular, plastid	25.62	30.06

Protein Annotations

EnsemblPlants:OQU77760	EnsemblPlantsGene:SORBI_3009G098700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF43	ProteinID:OQU77760
ProteinID:OQU77760.1	SEG:seg	SUPFAM:SSF47459	UniParc:UPI000B8B983D	UniProt:A0A1Z5R1Z3	MapMan:15.5.32

Description

hypothetical protein

Coordinates

chr9:+:37354025..37356661

Molecular Weight (calculated)

22556.4 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.175

Length

203 amino acids

Sequence
(BLAST)

001: MRAWLCPAGN RMWRVFVPVR GRASRRDSFN KEKAERGQHR LEIDTEGNWR VLRVMVSREQ KRGVLHEKLQ ILRSVTHSHA GDKMSIIADA SLYIKDLQQK
101: IAKLNQEIAS AQHANVCQPL VSVGVLDKGF LINVFMDKSC PPGLLACILE AFDEIGLTVL EARATCAGSF RLEAVGEEEG EGLIDAHAVE KAVVQAIKNC
201: PTN

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.