Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050840.2.1 | Tomato | cytosol | 96.88 | 97.48 |
| VIT_13s0067g02280.t01 | Wine grape | cytosol | 63.12 | 63.52 |
| KRH73223 | Soybean | cytosol | 59.38 | 60.9 |
| KRH31215 | Soybean | cytosol | 59.38 | 60.51 |
| KRH14875 | Soybean | cytosol | 58.75 | 60.26 |
| KRG97660 | Soybean | cytosol | 57.5 | 58.6 |
| AT2G40435.1 | Thale cress | mitochondrion, nucleus | 53.75 | 54.43 |
| AT3G56220.1 | Thale cress | nucleus | 52.5 | 53.85 |
| CDY06993 | Canola | nucleus | 40.0 | 52.89 |
| Os07t0676600-01 | Rice | cytosol | 51.88 | 52.87 |
| CDY45386 | Canola | cytosol | 51.88 | 51.88 |
| CDY52931 | Canola | cytosol, mitochondrion | 45.62 | 51.77 |
| CDX79988 | Canola | nucleus | 50.62 | 51.27 |
| Bra004568.1-P | Field mustard | nucleus | 50.62 | 51.27 |
| CDY71264 | Canola | cytosol | 50.0 | 50.96 |
| Bra007228.1-P | Field mustard | cytosol | 50.0 | 50.96 |
| CDX67638 | Canola | cytosol | 50.0 | 50.96 |
| Bra003232.1-P | Field mustard | cytosol | 50.0 | 50.96 |
| CDY32003 | Canola | cytosol | 50.0 | 50.96 |
| CDY27232 | Canola | cytosol | 50.0 | 50.96 |
| Os03t0338400-01 | Rice | nucleus | 51.25 | 50.31 |
| CDX72157 | Canola | cytosol | 48.75 | 49.68 |
| CDY23908 | Canola | nucleus | 48.75 | 49.06 |
| TraesCS4B01G167700.1 | Wheat | mitochondrion | 48.75 | 49.06 |
| Bra017003.1-P | Field mustard | cytosol | 38.75 | 48.82 |
| EER92303 | Sorghum | mitochondrion | 50.0 | 48.78 |
| TraesCS4A01G136800.2 | Wheat | mitochondrion | 48.75 | 48.75 |
| HORVU4Hr1G049550.2 | Barley | mitochondrion | 48.12 | 48.43 |
| TraesCS4D01G170400.1 | Wheat | cytosol, mitochondrion | 48.12 | 48.12 |
| TraesCS2B01G126400.1 | Wheat | mitochondrion | 46.88 | 47.77 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 45.0 | 47.06 |
| TraesCS2D01G108900.1 | Wheat | mitochondrion | 45.62 | 46.79 |
| Bra016997.1-P | Field mustard | cytosol | 31.25 | 46.3 |
| CDX76055 | Canola | cytosol | 44.38 | 45.81 |
| Zm00001d029078_P002 | Maize | mitochondrion | 46.88 | 45.73 |
| Bra014704.1-P | Field mustard | cytosol | 45.62 | 45.34 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 47.5 | 44.97 |
| CDY43345 | Canola | cytosol | 38.12 | 44.2 |
| KXG36938 | Sorghum | cytosol | 46.88 | 43.86 |
| TraesCS2A01G108800.1 | Wheat | mitochondrion | 42.5 | 41.98 |
| Zm00001d000400_P001 | Maize | nucleus | 41.88 | 39.88 |
| CDX93181 | Canola | cytosol | 23.75 | 39.58 |
| PGSC0003DMT400068342 | Potato | cytosol, nucleus, peroxisome | 41.25 | 37.5 |
| OQU77760 | Sorghum | mitochondrion | 45.0 | 35.47 |
| HORVU2Hr1G018600.1 | Barley | mitochondrion | 45.62 | 33.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071914 | EnsemblPlantsGene:PGSC0003DMG400027979 | EntrezGene:102583721 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR036638 | ncoils:Coil | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF43 | PGSC:PGSC0003DMG400027979 | RefSeq:XP_006366579.1 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI000295B7DB |
| UniProt:M1CPH7 | MapMan:35.2 | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027979]
Coordinates
chr6:+:31134218..31135845
Molecular Weight (calculated)
17990.2 Da
IEP (calculated)
4.641
GRAVY (calculated)
-0.377
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSREQKRAS VLHDKLQLLR SITKSHALSE SSIIVDASKY IQELKQKVER LNEDITTTTT PQTNSNNKTS SWPQIEVETL EKGFLVNVYS ERSCPGLLVS
101: ILQVLEDLSL NVLEARVSCT DTFRLQAFGG EDEETMINAQ VVTEAVFEAI KNWSESKEQG
101: ILQVLEDLSL NVLEARVSCT DTFRLQAFGG EDEETMINAQ VVTEAVFEAI KNWSESKEQG
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
Arabidopsis Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.