CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017003.1-P	Field mustard	cytosol	80.21	60.63
CDY45386	Canola	cytosol	81.25	48.75
AT2G40435.1	Thale cress	mitochondrion, nucleus	65.62	39.87
CDX79988	Canola	nucleus	63.54	38.61
CDY23908	Canola	nucleus	58.33	35.22
CDY43345	Canola	cytosol	47.92	33.33
CDY52931	Canola	cytosol, mitochondrion	45.83	31.21
CDX72157	Canola	cytosol	50.0	30.57
CDY32003	Canola	cytosol	47.92	29.3
CDY71264	Canola	cytosol	47.92	29.3
CDY27232	Canola	cytosol	47.92	29.3
CDX67638	Canola	cytosol	47.92	29.3
CDX76055	Canola	cytosol	44.79	27.74
KRG97660	Soybean	cytosol	43.75	26.75
KRH73223	Soybean	cytosol	42.71	26.28
KRH14875	Soybean	cytosol	41.67	25.64
VIT_13s0067g02280.t01	Wine grape	cytosol	41.67	25.16
KRH31215	Soybean	cytosol	40.62	24.84
CDY06993	Canola	nucleus	31.25	24.79
Solyc06g050840.2.1	Tomato	cytosol	40.62	24.53
PGSC0003DMT400071914	Potato	cytosol	39.58	23.75
Os03t0338400-01	Rice	nucleus	36.46	21.47
EER92303	Sorghum	mitochondrion	36.46	21.34
Zm00001d029078_P002	Maize	mitochondrion	36.46	21.34
Zm00001d047512_P002	Maize	cytosol, mitochondrion	37.5	21.3
Os05t0337200-01	Rice	cytosol, mitochondrion	33.33	20.91
Zm00001d000400_P001	Maize	nucleus	36.46	20.83
Os07t0676600-01	Rice	cytosol	33.33	20.38
TraesCS2D01G108900.1	Wheat	mitochondrion	31.25	19.23
TraesCS2B01G126400.1	Wheat	mitochondrion	31.25	19.11
HORVU4Hr1G049550.2	Barley	mitochondrion	31.25	18.87
KXG36938	Sorghum	cytosol	32.29	18.13
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	30.21	18.12
TraesCS4B01G167700.1	Wheat	mitochondrion	29.17	17.61
TraesCS4A01G136800.2	Wheat	mitochondrion	29.17	17.5
TraesCS2A01G108800.1	Wheat	mitochondrion	26.04	15.43
OQU77760	Sorghum	mitochondrion	31.25	14.78
HORVU2Hr1G018600.1	Barley	mitochondrion	31.25	13.76

Protein Annotations

EnsemblPlants:CDX93181	EnsemblPlantsGene:GSBRNA2T00155115001	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	ProteinID:CDX93181	ProteinID:CDX93181.1
SUPFAM:SSF55021	UniParc:UPI0004EE7032	MapMan:35.2	:	:	:

Description

BnaC04g47150D

Coordinates

chrLK031875:-:131515..132499

Molecular Weight (calculated)

10672.7 Da

IEP (calculated)

4.353

GRAVY (calculated)

-0.280

Length

96 amino acids

Sequence
(BLAST)

1: MVNLFIGKSR NPRKGFYDKS FLRGDQPGML VSVLEAFEDM GLDVLEARVS CTDSFSLHAM GVKQNEDDER MDAEAVKQAV TDAITSWGET NVPPFL

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.