CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06993	Canola	nucleus	82.98	96.69
Bra016997.1-P	Field mustard	cytosol	68.79	89.81
CDY45386	Canola	cytosol	87.23	76.88
AT2G40435.1	Thale cress	mitochondrion, nucleus	74.47	66.46
CDX79988	Canola	nucleus	72.34	64.56
CDY23908	Canola	nucleus	65.96	58.49
CDY27232	Canola	cytosol	62.41	56.05
CDX72157	Canola	cytosol	60.99	54.78
CDX67638	Canola	cytosol	60.28	54.14
CDY32003	Canola	cytosol	60.28	54.14
CDY71264	Canola	cytosol	60.28	54.14
CDX76055	Canola	cytosol	55.32	50.32
KRG97660	Soybean	cytosol	54.61	49.04
KRH31215	Soybean	cytosol	53.9	48.41
KRH73223	Soybean	cytosol	52.48	47.44
KRH14875	Soybean	cytosol	51.77	46.79
VIT_13s0067g02280.t01	Wine grape	cytosol	52.48	46.54
CDY43345	Canola	cytosol	45.39	46.38
Solyc06g050840.2.1	Tomato	cytosol	51.77	45.91
CDX93181	Canola	cytosol	31.21	45.83
PGSC0003DMT400071914	Potato	cytosol	51.77	45.62
Os07t0676600-01	Rice	cytosol	46.81	42.04
EER92303	Sorghum	mitochondrion	48.23	41.46
Os03t0338400-01	Rice	nucleus	47.52	41.1
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	46.1	40.62
TraesCS4A01G136800.2	Wheat	mitochondrion	46.1	40.62
Zm00001d029078_P002	Maize	mitochondrion	46.1	39.63
TraesCS4B01G167700.1	Wheat	mitochondrion	44.68	39.62
TraesCS2D01G108900.1	Wheat	mitochondrion	43.26	39.1
Zm00001d047512_P002	Maize	cytosol, mitochondrion	46.81	39.05
TraesCS2B01G126400.1	Wheat	mitochondrion	43.26	38.85
HORVU4Hr1G049550.2	Barley	mitochondrion	42.55	37.74
KXG36938	Sorghum	cytosol	44.68	36.84
Os05t0337200-01	Rice	cytosol, mitochondrion	39.72	36.6
TraesCS2A01G108800.1	Wheat	mitochondrion	41.84	36.42
Zm00001d000400_P001	Maize	nucleus	41.13	34.52
HORVU2Hr1G018600.1	Barley	mitochondrion	43.26	27.98
OQU77760	Sorghum	mitochondrion	39.72	27.59

Protein Annotations

EnsemblPlants:CDY52931	EnsemblPlantsGene:GSBRNA2T00008116001	GO:A0A078ISY4	ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8
ProteinID:CDY52931	ProteinID:CDY52931.1	UniParc:UPI0004EE0677	UniProt:A0A078ISY4	MapMan:35.2	:

Description

BnaA04g29380DBnaA04g29380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISY4]

Coordinates

chrLK033142:+:67083..68104

Molecular Weight (calculated)

15856.9 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.374

Length

141 amino acids

Sequence
(BLAST)

001: MVSWERNRGS LQEKFQLLRS ATNSHAQSET SIIMDASKYI QNLKKKVERF KEDTAAEQSS SEPTDPTTPM VKVETLEKGF MIKVFSGENQ PGMLVSVLEA
101: FEDMGLDVLE ARVSCTDSFS LHAMGVKCLY DLLNTNELTL R

Best Arabidopsis Sequence Match ( AT2G40435.2 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLEVIN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.