Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76055 | Canola | cytosol | 84.06 | 74.84 |
| CDX67638 | Canola | cytosol | 69.57 | 61.15 |
| CDY27232 | Canola | cytosol | 69.57 | 61.15 |
| CDY32003 | Canola | cytosol | 69.57 | 61.15 |
| CDY71264 | Canola | cytosol | 69.57 | 61.15 |
| AT3G56220.1 | Thale cress | nucleus | 67.39 | 59.62 |
| CDX72157 | Canola | cytosol | 65.94 | 57.96 |
| CDX79988 | Canola | nucleus | 56.52 | 49.37 |
| CDY45386 | Canola | cytosol | 55.8 | 48.12 |
| CDX93181 | Canola | cytosol | 33.33 | 47.92 |
| CDY52931 | Canola | cytosol, mitochondrion | 46.38 | 45.39 |
| CDY23908 | Canola | nucleus | 52.17 | 45.28 |
| CDY06993 | Canola | nucleus | 39.13 | 44.63 |
| KRG97660 | Soybean | cytosol | 49.28 | 43.31 |
| KRH73223 | Soybean | cytosol | 48.55 | 42.95 |
| KRH31215 | Soybean | cytosol | 48.55 | 42.68 |
| KRH14875 | Soybean | cytosol | 47.83 | 42.31 |
| Solyc06g050840.2.1 | Tomato | cytosol | 44.93 | 38.99 |
| VIT_13s0067g02280.t01 | Wine grape | cytosol | 44.93 | 38.99 |
| PGSC0003DMT400071914 | Potato | cytosol | 44.2 | 38.12 |
| Os07t0676600-01 | Rice | cytosol | 42.03 | 36.94 |
| EER92303 | Sorghum | mitochondrion | 43.48 | 36.59 |
| Zm00001d029078_P002 | Maize | mitochondrion | 43.48 | 36.59 |
| Os03t0338400-01 | Rice | nucleus | 42.03 | 35.58 |
| TraesCS4D01G170400.1 | Wheat | cytosol, mitochondrion | 40.58 | 35.0 |
| HORVU4Hr1G049550.2 | Barley | mitochondrion | 39.86 | 34.59 |
| TraesCS4B01G167700.1 | Wheat | mitochondrion | 39.86 | 34.59 |
| KXG36938 | Sorghum | cytosol | 42.75 | 34.5 |
| TraesCS4A01G136800.2 | Wheat | mitochondrion | 39.86 | 34.38 |
| Zm00001d047512_P002 | Maize | cytosol, mitochondrion | 42.03 | 34.32 |
| Os05t0337200-01 | Rice | cytosol, mitochondrion | 36.96 | 33.33 |
| TraesCS2D01G108900.1 | Wheat | mitochondrion | 36.23 | 32.05 |
| TraesCS2B01G126400.1 | Wheat | mitochondrion | 36.23 | 31.85 |
| TraesCS2A01G108800.1 | Wheat | mitochondrion | 32.61 | 27.78 |
| Zm00001d000400_P001 | Maize | nucleus | 33.33 | 27.38 |
| OQU77760 | Sorghum | mitochondrion | 35.51 | 24.14 |
| HORVU2Hr1G018600.1 | Barley | mitochondrion | 36.23 | 22.94 |
Protein Annotations
| EnsemblPlants:CDY43345 | EnsemblPlantsGene:GSBRNA2T00076401001 | ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF8 | ProteinID:CDY43345 |
| ProteinID:CDY43345.1 | SEG:seg | UniParc:UPI0004EF0B51 | UniProt:A0A078HXS4 | MapMan:35.2 | : |
Description
BnaC04g25110DBnaC04g25110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXS4]
Coordinates
chrLK032553:+:188653..189265
Molecular Weight (calculated)
15236.8 Da
IEP (calculated)
4.196
GRAVY (calculated)
-0.352
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MISHSILQES ETSIITDASK YIKNLKKKVE EINNVTTSEQ YFCDPTDPMV TVDTLENGFL INITSRKNDG GMLVCLLEAF EDLGLDVVEA RVSCTDSFSM
101: HAVGSSNNDD GESMDAEAVK QAVEVAVRTR SDGHEQKW
101: HAVGSSNNDD GESMDAEAVK QAVEVAVRTR SDGHEQKW
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
Arabidopsis Description
Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.