Factsheet for AT3G56220.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003232.1-P	Field mustard	cytosol	81.41	80.89
CDX67638	Canola	cytosol	81.41	80.89
CDY32003	Canola	cytosol	81.41	80.89
CDY71264	Canola	cytosol	81.41	80.89
Bra007228.1-P	Field mustard	cytosol	78.85	78.34
CDY27232	Canola	cytosol	78.85	78.34
CDX72157	Canola	cytosol	78.21	77.71
AT2G40435.1	Thale cress	mitochondrion, nucleus	68.59	67.72
CDY43345	Canola	cytosol	59.62	67.39
Bra014704.1-P	Field mustard	cytosol	68.59	66.46
CDX76055	Canola	cytosol	64.74	65.16
KRH73223	Soybean	cytosol	57.05	57.05
KRH14875	Soybean	cytosol	56.41	56.41
KRH31215	Soybean	cytosol	55.77	55.41
KRG97660	Soybean	cytosol	55.13	54.78
VIT_13s0067g02280.t01	Wine grape	cytosol	55.77	54.72
Solyc06g050840.2.1	Tomato	cytosol	53.85	52.83
PGSC0003DMT400071914	Potato	cytosol	53.85	52.5
Os03t0338400-01	Rice	nucleus	50.0	47.85
Os07t0676600-01	Rice	cytosol	47.44	47.13
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	47.44	46.25
EER92303	Sorghum	mitochondrion	48.08	45.73
TraesCS4A01G136800.2	Wheat	mitochondrion	46.79	45.62
TraesCS4B01G167700.1	Wheat	mitochondrion	45.51	44.65
Zm00001d029078_P002	Maize	mitochondrion	46.79	44.51
HORVU4Hr1G049550.2	Barley	mitochondrion	44.87	44.03
Os05t0337200-01	Rice	cytosol, mitochondrion	42.95	43.79
Zm00001d047512_P002	Maize	cytosol, mitochondrion	46.79	43.2
TraesCS2D01G108900.1	Wheat	mitochondrion	42.95	42.95
TraesCS2B01G126400.1	Wheat	mitochondrion	42.95	42.68
KXG36938	Sorghum	cytosol	46.15	42.11
Zm00001d000400_P001	Maize	nucleus	41.03	38.1
TraesCS2A01G108800.1	Wheat	mitochondrion	39.1	37.65
OQU77760	Sorghum	mitochondrion	42.95	33.0
HORVU2Hr1G018600.1	Barley	mitochondrion	42.95	30.73

Protein Annotations

MapMan:35.2	EntrezGene:824788	UniProt:A0A178VDE0	ProteinID:AEE79498.1	EMBL:AK228035	ArrayExpress:AT3G56220
EnsemblPlantsGene:AT3G56220	RefSeq:AT3G56220	TAIR:AT3G56220	RefSeq:AT3G56220-TAIR-G	EnsemblPlants:AT3G56220.1	TAIR:AT3G56220.1
EMBL:BT004764	ProteinID:CAB87421.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	RefSeq:NP_191181.1	ProteinID:OAP03794.1	PANTHER:PTHR31945
PANTHER:PTHR31945:SF8	UniProt:Q9LYM0	SUPFAM:SSF47459	UniParc:UPI000000C472	:	:

Description

At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]

Coordinates

chr3:+:20858742..20860537

Molecular Weight (calculated)

17308.4 Da

IEP (calculated)

5.309

GRAVY (calculated)

-0.421

Length

156 amino acids

Sequence
(BLAST)

001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.