CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76078	Soybean	mitochondrion	97.33	97.33
KRH40793	Soybean	cytosol	69.33	68.42
KRH00396	Soybean	nucleus	69.33	68.42
VIT_08s0058g00960.t01	Wine grape	mitochondrion	68.67	66.03
GSMUA_Achr5P29590_001	Banana	cytosol	48.0	59.02
GSMUA_Achr11P...	Banana	cytosol	56.67	58.62
KRH73223	Soybean	cytosol	60.67	58.33
KRH14875	Soybean	cytosol	60.0	57.69
KRH31215	Soybean	cytosol	58.0	55.41
KRG97660	Soybean	cytosol	57.33	54.78
Os07t0676600-01	Rice	cytosol	57.33	54.78
TraesCS4A01G136800.2	Wheat	mitochondrion	53.33	50.0
EER92303	Sorghum	mitochondrion	54.67	50.0
Os03t0338400-01	Rice	nucleus	54.0	49.69
TraesCS2B01G126400.1	Wheat	mitochondrion	52.0	49.68
Os05t0337200-01	Rice	cytosol, mitochondrion	50.67	49.67
Zm00001d029078_P002	Maize	mitochondrion	54.0	49.39
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	52.67	49.38
TraesCS2D01G108900.1	Wheat	mitochondrion	51.33	49.36
TraesCS4B01G167700.1	Wheat	mitochondrion	52.0	49.06
HORVU4Hr1G049550.2	Barley	mitochondrion	52.0	49.06
KXG36938	Sorghum	cytosol	55.33	48.54
Zm00001d047512_P002	Maize	cytosol, mitochondrion	52.67	46.75
KRH30146	Soybean	mitochondrion	48.0	45.28
KRH17139	Soybean	mitochondrion	47.33	44.65
TraesCS2A01G108800.1	Wheat	mitochondrion	46.67	43.21
KRH72775	Soybean	mitochondrion	45.33	43.04
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	49.33	42.05
Solyc09g018500.1.1	Tomato	cytosol	48.67	41.24
Zm00001d000400_P001	Maize	nucleus	46.0	41.07
HORVU2Hr1G018600.1	Barley	mitochondrion	52.0	35.78
OQU77760	Sorghum	mitochondrion	47.33	34.98
KRG98184	Soybean	extracellular, plastid	38.67	33.53

Protein Annotations

EMBL:ACUP02001360	EnsemblPlants:KRH65496	EnsemblPlantsGene:GLYMA_03G040500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:ACT_dom	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR036638
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	PFscan:PS51671	ProteinID:KRH65496	ProteinID:KRH65496.1
SUPFAM:SSF47459	UniParc:UPI00023BC4FA	UniProt:I1JL12	MapMan:15.5.32	:	:

Description

hypothetical protein

Coordinates

chr3:-:5063525..5065688

Molecular Weight (calculated)

16537.6 Da

IEP (calculated)

4.286

GRAVY (calculated)

-0.283

Length

150 amino acids

Sequence
(BLAST)

001: MDSRRRSKKA AMQRKLQQLR SVTNSSAVNK ASIIVDATRY IEELKQKVDG LNSELGTAES SISQDELPMV TVETLERGFL INVFSERNCP GMLAAILDAF
101: EELGLDVLDA RVSCEDTFQL EAVGGESQEN ESIDAQVVKQ AVLQAIQNMD

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.