CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65496	Soybean	mitochondrion	97.33	97.33
KRH40793	Soybean	cytosol	70.0	69.08
KRH00396	Soybean	nucleus	70.0	69.08
VIT_08s0058g00960.t01	Wine grape	mitochondrion	68.0	65.38
GSMUA_Achr5P29590_001	Banana	cytosol	48.0	59.02
GSMUA_Achr11P...	Banana	cytosol	56.67	58.62
KRH73223	Soybean	cytosol	60.0	57.69
KRH14875	Soybean	cytosol	59.33	57.05
KRH31215	Soybean	cytosol	57.33	54.78
KRG97660	Soybean	cytosol	57.33	54.78
Os07t0676600-01	Rice	cytosol	56.67	54.14
Os05t0337200-01	Rice	cytosol, mitochondrion	51.33	50.33
EER92303	Sorghum	mitochondrion	54.0	49.39
TraesCS4A01G136800.2	Wheat	mitochondrion	52.67	49.38
Os03t0338400-01	Rice	nucleus	53.33	49.08
TraesCS2B01G126400.1	Wheat	mitochondrion	51.33	49.04
Zm00001d029078_P002	Maize	mitochondrion	53.33	48.78
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	52.0	48.75
TraesCS2D01G108900.1	Wheat	mitochondrion	50.67	48.72
TraesCS4B01G167700.1	Wheat	mitochondrion	51.33	48.43
HORVU4Hr1G049550.2	Barley	mitochondrion	51.33	48.43
KXG36938	Sorghum	cytosol	54.67	47.95
Zm00001d047512_P002	Maize	cytosol, mitochondrion	52.0	46.15
KRH30146	Soybean	mitochondrion	47.33	44.65
KRH17139	Soybean	mitochondrion	46.0	43.4
TraesCS2A01G108800.1	Wheat	mitochondrion	46.0	42.59
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	49.33	42.05
KRH72775	Soybean	mitochondrion	44.0	41.77
Solyc09g018500.1.1	Tomato	cytosol	48.67	41.24
Zm00001d000400_P001	Maize	nucleus	44.67	39.88
HORVU2Hr1G018600.1	Barley	mitochondrion	51.33	35.32
OQU77760	Sorghum	mitochondrion	46.67	34.48
KRG98184	Soybean	extracellular, plastid	38.67	33.53

Protein Annotations

EntrezGene:100500546	MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	EMBL:ACUP02000558	EMBL:BT091483
UniProt:C6T227	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G129700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR036638	EnsemblPlants:KRH76078	ProteinID:KRH76078
ProteinID:KRH76078.1	PFscan:PS51671	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	SUPFAM:SSF47459	UniParc:UPI0001B14E8F

Description

hypothetical protein

Coordinates

chr1:+:44418856..44421115

Molecular Weight (calculated)

16495.5 Da

IEP (calculated)

4.213

GRAVY (calculated)

-0.310

Length

150 amino acids

Sequence
(BLAST)

001: MDSRRRGKNA SMQRKLQQLR SVTNSSAVNK ASIIVDATRY IEELKQKVDG LNSELGTAES SISQDELPMV TVETLERGFL INVFSERNCP GMLGAILDAF
101: EELGLDVLDA RVSCEDTFQL EAVGGESQEN ESIDAQVVKQ AVLQAIQNMD

Best Arabidopsis Sequence Match ( AT3G56220.2 )
(BLAST)

001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNVN TVLPYHHFI

Arabidopsis Description

At3g56220 [Source:UniProtKB/TrEMBL;Acc:Q9LYM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.