CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00396	Soybean	nucleus	82.89	82.89
KRH76078	Soybean	mitochondrion	69.08	70.0
KRH65496	Soybean	mitochondrion	68.42	69.33
GSMUA_Achr11P...	Banana	cytosol	59.21	62.07
GSMUA_Achr5P29590_001	Banana	cytosol	49.34	61.48
VIT_08s0058g00960.t01	Wine grape	mitochondrion	61.18	59.62
KRH73223	Soybean	cytosol	61.18	59.62
KRH14875	Soybean	cytosol	60.53	58.97
KRH31215	Soybean	cytosol	59.21	57.32
KRG97660	Soybean	cytosol	58.55	56.69
Os07t0676600-01	Rice	cytosol	52.63	50.96
Os05t0337200-01	Rice	cytosol, mitochondrion	50.66	50.33
EER92303	Sorghum	mitochondrion	51.97	48.17
TraesCS4A01G136800.2	Wheat	mitochondrion	50.66	48.12
KXG36938	Sorghum	cytosol	53.95	47.95
TraesCS4D01G170400.1	Wheat	cytosol, mitochondrion	50.0	47.5
Os03t0338400-01	Rice	nucleus	50.66	47.24
TraesCS4B01G167700.1	Wheat	mitochondrion	49.34	47.17
HORVU4Hr1G049550.2	Barley	mitochondrion	48.68	46.54
Zm00001d029078_P002	Maize	mitochondrion	50.0	46.34
Zm00001d047512_P002	Maize	cytosol, mitochondrion	50.0	44.97
TraesCS2B01G126400.1	Wheat	mitochondrion	46.05	44.59
TraesCS2D01G108900.1	Wheat	mitochondrion	45.39	44.23
KRH17139	Soybean	mitochondrion	44.74	42.77
KRH30146	Soybean	mitochondrion	44.08	42.14
KRH72775	Soybean	mitochondrion	43.42	41.77
PGSC0003DMT400068342	Potato	cytosol, nucleus, peroxisome	48.03	41.48
Solyc09g018500.1.1	Tomato	cytosol	48.03	41.24
Zm00001d000400_P001	Maize	nucleus	45.39	41.07
TraesCS2A01G108800.1	Wheat	mitochondrion	41.45	38.89
OQU77760	Sorghum	mitochondrion	48.03	35.96
KRG98184	Soybean	extracellular, plastid	40.79	35.84
HORVU2Hr1G018600.1	Barley	mitochondrion	46.71	32.57

Protein Annotations

EntrezGene:100527466	MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	EMBL:ACUP02006058	EMBL:BT092309
UniProt:C6T4E8	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G278100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR036638	EnsemblPlants:KRH40793	ProteinID:KRH40793
ProteinID:KRH40793.1	PFscan:PS51671	PANTHER:PTHR31945	PANTHER:PTHR31945:SF8	SUPFAM:SSF47459	UniParc:UPI0001B158FA

Description

hypothetical protein

Coordinates

chr9:-:49340346..49342377

Molecular Weight (calculated)

16761.1 Da

IEP (calculated)

4.479

GRAVY (calculated)

-0.174

Length

152 amino acids

Sequence
(BLAST)

001: MAASREKRRA SLEETLQQLR DVTNSTALNK ASIIVDASKY IEELKQKVEG LNSELEIAES STTTQIDELP MVIVKTLKKG FLINVLLEKN CPGMLVSILE
101: AFEELGLDVL DARVSCEDSF QLEAVGRESH KNDSVDAQVV KQAVLQAIKN AD

Best Arabidopsis Sequence Match ( AT2G40435.1 )
(BLAST)

001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN

Arabidopsis Description

Transcription factor SCREAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.