Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G445900.1 | Wheat | nucleus | 99.64 | 99.64 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 90.75 | 90.75 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 96.8 | 87.18 |
| KXG37359 | Sorghum | nucleus | 83.27 | 82.39 |
| Zm00001d018967_P001 | Maize | nucleus | 75.44 | 74.39 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 67.26 | 68.98 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 72.95 | 68.33 |
| Bra036256.1-P | Field mustard | nucleus | 50.89 | 62.72 |
| KRH55381 | Soybean | cytosol | 15.3 | 62.32 |
| KRH32094 | Soybean | nucleus | 56.58 | 56.18 |
| Bra018539.1-P | Field mustard | nucleus | 50.18 | 55.51 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 60.14 | 53.99 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 55.16 | 53.63 |
| KRG95612 | Soybean | nucleus | 55.52 | 53.42 |
| CDX91293 | Canola | nucleus | 55.87 | 52.68 |
| CDY21898 | Canola | nucleus | 55.87 | 52.16 |
| KRH67287 | Soybean | nucleus | 54.09 | 52.05 |
| PGSC0003DMT400049768 | Potato | nucleus | 55.52 | 51.66 |
| CDY18011 | Canola | nucleus | 55.87 | 51.64 |
| AT4G02590.1 | Thale cress | nucleus | 56.94 | 51.61 |
| Solyc09g065820.2.1 | Tomato | nucleus | 55.16 | 51.32 |
| CDY22062 | Canola | nucleus | 55.52 | 51.32 |
| Bra000872.1-P | Field mustard | nucleus | 56.23 | 51.13 |
| VIT_14s0030g02230.t01 | Wine grape | nucleus | 60.14 | 51.06 |
| CDX90930 | Canola | nucleus | 55.87 | 50.65 |
| CDX97278 | Canola | nucleus | 53.74 | 50.5 |
| PGSC0003DMT400034840 | Potato | nucleus | 52.67 | 50.0 |
| PGSC0003DMT400015596 | Potato | nucleus | 53.74 | 49.84 |
| Solyc09g083220.2.1 | Tomato | nucleus | 53.74 | 49.67 |
| CDY18143 | Canola | nucleus | 53.38 | 49.02 |
| Solyc03g005350.2.1 | Tomato | nucleus | 50.89 | 48.31 |
| Bra033368.1-P | Field mustard | nucleus | 53.38 | 48.23 |
| CDX89919 | Canola | nucleus | 53.38 | 48.23 |
| KRH34087 | Soybean | nucleus | 54.45 | 46.65 |
| KRG92679 | Soybean | nucleus | 54.45 | 46.08 |
| AT1G03040.3 | Thale cress | nucleus | 53.38 | 45.05 |
| TraesCS6D01G341200.1 | Wheat | nucleus | 42.35 | 33.24 |
| TraesCS7D01G149400.1 | Wheat | nucleus | 43.42 | 30.5 |
| TraesCS5D01G233000.1 | Wheat | nucleus | 48.75 | 29.27 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 13.52 | 24.2 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 14.59 | 21.81 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 36.65 | 21.46 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 15.3 | 14.48 |
| TraesCS5D01G060300.1 | Wheat | nucleus | 16.37 | 13.14 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 15.66 | 13.02 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 16.37 | 11.0 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 15.66 | 10.23 |
| TraesCS5D01G386500.1 | Wheat | nucleus | 18.15 | 9.88 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 15.3 | 9.45 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 16.73 | 9.36 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G449200.1 | EnsemblPlantsGene:TraesCS5D01G449200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF103 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:498380021..498382879
Molecular Weight (calculated)
30028.7 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.516
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQPPQGPE DDFLDQFFSL TNSLSAAGRP SGDQPFSLAL SLDAASDASG SRGGIGDDAG NAAERDGVQL PGLFPPVFGG GLQPPHLRPS HPPPQMFHAQ
101: QPKQGGPAGG PQPPAPRPKV RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAVMLDEILD YVKFLRLQVK VLSMSRLGGA GAVAQLVSDI
201: PLSVKGEASD GGSKQQIWEK WSTDGTEKQV AKLMDEDIGA AMQFLQSKAL CMMPVSLAMA IYDTQHSQDG QPVKPEPNNT A
101: QPKQGGPAGG PQPPAPRPKV RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAVMLDEILD YVKFLRLQVK VLSMSRLGGA GAVAQLVSDI
201: PLSVKGEASD GGSKQQIWEK WSTDGTEKQV AKLMDEDIGA AMQFLQSKAL CMMPVSLAMA IYDTQHSQDG QPVKPEPNNT A
001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
Arabidopsis Description
UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.