Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18143 | Canola | nucleus | 79.28 | 86.27 |
| CDX89919 | Canola | nucleus | 79.58 | 85.21 |
| Bra033368.1-P | Field mustard | nucleus | 79.58 | 85.21 |
| AT4G02590.1 | Thale cress | nucleus | 75.98 | 81.61 |
| KRG95612 | Soybean | nucleus | 62.76 | 71.58 |
| KRH32094 | Soybean | nucleus | 60.66 | 71.38 |
| Os07t0182200-01 | Rice | cytosol | 28.83 | 70.59 |
| KRH67287 | Soybean | nucleus | 61.56 | 70.21 |
| Solyc09g065820.2.1 | Tomato | nucleus | 62.76 | 69.21 |
| PGSC0003DMT400049768 | Potato | nucleus | 62.76 | 69.21 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 57.96 | 66.78 |
| KRH55381 | Soybean | cytosol | 13.21 | 63.77 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 49.25 | 54.67 |
| Zm00001d013073_P002 | Maize | nucleus | 46.25 | 54.04 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 44.14 | 53.65 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 45.05 | 53.38 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 45.05 | 53.38 |
| KXG37359 | Sorghum | nucleus | 45.35 | 53.17 |
| Os03t0797600-01 | Rice | nucleus | 46.55 | 52.72 |
| OQU88567 | Sorghum | nucleus | 43.84 | 52.71 |
| Zm00001d018967_P001 | Maize | nucleus | 44.44 | 51.93 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 42.64 | 50.53 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 43.84 | 46.79 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 48.65 | 45.89 |
| AT5G58010.1 | Thale cress | nucleus | 31.83 | 35.69 |
| AT2G24260.1 | Thale cress | nucleus | 31.83 | 30.29 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 31.23 | 29.05 |
| AT5G67110.1 | Thale cress | nucleus | 11.41 | 18.1 |
| AT3G62090.2 | Thale cress | nucleus | 13.21 | 12.12 |
| AT4G00050.1 | Thale cress | nucleus | 13.81 | 11.53 |
| AT4G28815.1 | Thale cress | vacuole | 10.51 | 11.4 |
| AT4G36930.1 | Thale cress | nucleus | 12.31 | 10.99 |
| AT2G20180.2 | Thale cress | nucleus | 15.62 | 10.88 |
| AT2G46970.1 | Thale cress | nucleus | 13.51 | 10.82 |
| AT4G28790.1 | Thale cress | nucleus | 13.21 | 10.65 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 14.71 | 10.38 |
| AT3G59060.2 | Thale cress | nucleus | 13.51 | 10.14 |
| AT4G28811.1 | Thale cress | nucleus | 14.11 | 8.64 |
| AT1G09530.3 | Thale cress | nucleus | 13.51 | 8.59 |
| AT4G28800.2 | Thale cress | nucleus | 11.11 | 8.1 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:839446 | UniProt:A0A1P8ASS1 | ProteinID:ANM59650.1 | ArrayExpress:AT1G03040 |
| EnsemblPlantsGene:AT1G03040 | RefSeq:AT1G03040 | TAIR:AT1G03040 | RefSeq:AT1G03040-TAIR-G | EnsemblPlants:AT1G03040.3 | Unigene:At.20497 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001321993.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF15 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000848D450 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G03040]
Coordinates
chr1:-:703849..706664
Molecular Weight (calculated)
36366.5 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.459
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EVRLERDTSL KKEQNFGNGF SCTDLWCKNF LQDETQAVWE KWSNDGTERQ VAKLMEENVG AAMQLLQSKA
301: LCIMPISLAM AIYHSQPPDT SSSIVKPEMN PPP
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EVRLERDTSL KKEQNFGNGF SCTDLWCKNF LQDETQAVWE KWSNDGTERQ VAKLMEENVG AAMQLLQSKA
301: LCIMPISLAM AIYHSQPPDT SSSIVKPEMN PPP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.